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Markov State Models (MSMs) are a powerful framework to reproduce the long-time conformational dynamics of biomolecules using a set of short Molecular Dynamics (MD) simulations. However, precise kinetics predictions of MSMs heavily rely on…

Biomolecules · Quantitative Biology 2018-06-27 Qihua Chen , Jiangyan Feng , Shriyaa Mittal , Diwakar Shukla

We propose a new framework for identifying mechanical properties of heterogeneous materials without a closed-form constitutive equation. Given a full-field measurement of the displacement field, for instance as obtained from digital image…

The authors propose a new modeling approach based on the impedance field method (IFM) to analyze the general geometric variations in device simulations. Compared with the direct modeling of multiple variational devices, the proposed…

Mesoscale and Nanoscale Physics · Physics 2016-04-27 Bo Fu , Seonghoon Jin , Woosung Choi , Keun-Ho Lee , Young-Kwan Park

This paper presents an automated method for optimizing parameters in analog/high-frequency circuits, aiming to maximize performance parameters of a radio-frequency (RF) receiver. The design target includes a reduction of power consumption…

Neural and Evolutionary Computing · Computer Science 2024-03-28 Mingi Kwon , Yeonjun Lee , Ickhyun Song

Multi-view datasets offer diverse forms of data that can enhance prediction models by providing complementary information. However, the use of multi-view data leads to an increase in high-dimensional data, which poses significant challenges…

Neural and Evolutionary Computing · Computer Science 2024-03-05 Vandad Imani , Carlos Sevilla-Salcedo , Elaheh Moradi , Vittorio Fortino , Jussi Tohka

Existing multi-criteria decision-making (MCDM) methods often face challenges when evaluating a large number of alternatives, leading to skewed results in selecting the optimal choice. Similarly, conventional efficiency analysis (EA)…

Optimization and Control · Mathematics 2026-03-03 Fuh-Hwa Franklin Liu , Su-Chuan Shih

The emergence of virtual staining technology provides a rapid and efficient alternative for researchers in tissue pathology. It enables the utilization of unlabeled microscopic samples to generate virtual replicas of chemically stained…

Image and Video Processing · Electrical Eng. & Systems 2025-01-08 Junjia Wang , Bo Xiong , You Zhou , Xun Cao , Zhan Ma

We evaluate a co-evolutionary calibration framework for the Heston model in which a genetic algorithm (GA) over parameters is coupled to an evolving neural inverse map from option surfaces to parameters. While GA-history sampling can reduce…

Pricing of Securities · Quantitative Finance 2025-12-04 Julian Gutierrez

In the field of human-computer interaction (HCI), the usability assessment of m-learning (mobile-learning) applications is a real challenge. Such assessment typically involves extraction of the best features of an application like…

Human-Computer Interaction · Computer Science 2024-04-26 Muhammad Asghar , Imran Sarwar Bajwa , Shabana Ramzan , Hina Afreen , Saima Abdullah

Multivariable parametric models are essential for optimizing the performance of high-tech systems. The main objective of this paper is to develop an identification strategy that provides accurate parametric models for complex multivariable…

Systems and Control · Electrical Eng. & Systems 2025-03-05 M. van der Hulst , R. A. González , K. Classens , P. Tacx , N. Dirkx , J. van de Wijdeven , T. Oomen

Genetic Algorithms (GAs) are explored as a tool for probing new physics with high dimensionality. We study the 19-dimensional pMSSM, including experimental constraints from all sources and assessing the consistency of potential signals of…

High Energy Physics - Phenomenology · Physics 2018-05-14 Steven Abel , David G. Cerdeno , Sandra Robles

Application of Genetic Algorithm (GA) for determination of parameters of an analytical representation of diatomic molecule potential is presented. GA can be used for finding potential characteristics of an electronic energy state which can…

Chemical Physics · Physics 2020-05-12 Tomasz Urbanczyk , Jaroslaw Koperski

The finite element method (FEM) is commonly used in computational cardiac simulations. For this method, a mesh is constructed to represent the geometry and, subsequently, to approximate the solution. To accurately capture curved geometrical…

The accuracy and efficiency of a coarse-grained (CG) force field are pivotal for high-precision molecular simulations of large systems with complex molecules. We present an automated mapping and optimization framework for molecular…

Computational Physics · Physics 2024-08-14 Zhixuan Zhong , Lifeng Xu , Jian Jiang

In this study, a stochastic constitutive modeling approach for elastomeric materials is developed to consider uncertainty in material behavior and its prediction. This effort leads to a demonstration of the deterministic approaches error…

Soft Condensed Matter · Physics 2020-10-27 Aref Ghaderi , Vahid Morovati , Roozbeh Dargazany

An automatic elastic registration method suited for vascularized organs is proposed. The vasculature in both the preoperative and intra-operative images is represented as a graph. A typical application of this method is the fusion of…

Computer Vision and Pattern Recognition · Computer Science 2019-12-16 Jaime Garcia Guevara , Igor Peterlik , Marie-Odile Berger , Stéphane Cotin

Genetic Algorithms (GA) are a class of metaheuristic global optimization methods inspired by the process of natural selection among individuals in a population. Despite their widespread use, a comprehensive theoretical analysis of these…

Optimization and Control · Mathematics 2025-02-24 Giacomo Borghi , Lorenzo Pareschi

The increasing availability of full-field displacement data from imaging techniques in experimental mechanics is determining a gradual shift in the paradigm of material model calibration and discovery, from using several simple-geometry…

Computational Engineering, Finance, and Science · Computer Science 2025-07-01 Saeid Ghouli , Moritz Flaschel , Siddhant Kumar , Laura De Lorenzis

An optimization scheme using the Cell-based Smoothed Finite Element Method (CS-FEM) combined with a Genetic Algorithm (GA) framework is proposed in this paper to design shape adaptive laminated composite marine propellers. The proposed…

Numerical Analysis · Mathematics 2013-10-18 Manudha T Herath , Sundararajan Natarajan , B Gangadhara Prusty , Nigel St John

The demand for high-resolution subsurface imaging and continuous Earth monitoring has driven rapid growth in active and passive seismic data from dense geophone deployments, distributed acoustic sensing (DAS) arrays, and large-scale 2D and…

Geophysics · Physics 2026-05-13 Jiahua Zhao , Umair bin Waheed , Jing Sun , Yang Cui , Nikos Savva , Eric Verschuur