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Isogeometric Analysis generalizes classical finite element analysis and intends to integrate it with the field of Computer-Aided Design. A central problem in achieving this objective is the reconstruction of analysis-suitable models from…

Numerical Analysis · Mathematics 2022-11-09 Thomas Takacs , Deepesh Toshniwal

In a seminal paper Caspar and Klug established a theory that provides a family of polyhedra as blueprints for the structural organisation of viral capsids. In particular, they encode the locations of the proteins in the shells that…

Biomolecules · Quantitative Biology 2007-05-23 T. Keef , R. Twarock

Quasicrystals are intriguing ordered structures characterized by the lack of translational symmetry and the existence of rotational symmetry. The tiling of different geometric units such as triangles and squares in two-dimensional space can…

Soft Condensed Matter · Physics 2024-10-11 Xin Wang , An-Chang Shi , Pingwen Zhang , Kai Jiang

A systematic study of the doublet bands observed in odd-odd mass $\sim$ 100 is performed using the microscopic triaxial projected shell model approach. This mass region has depicted some novel features which are not observed in other mass…

Nuclear Theory · Physics 2013-12-05 W. A. Dar , J. A. Sheikh , G. H. Bhat , R. Palit , S. Frauendorf

The discovery of quadrupole topology opens a new horizon in the study of topological phenomena. However, the existing experimental realizations of quadrupole topological insulators in symmorphic lattices with $\pi$-fluxes often break the…

Strongly Correlated Electrons · Physics 2020-07-08 Zhi-Kang Lin , Hai-Xiao Wang , Zhan Xiong , Ming-Hui Lu , Jian-Hua Jiang

We recently proposed quantum simulators of "twistronic-like" physics based on ultracold atoms and syntheticdimensions [Phys. Rev. Lett. 125, 030504 (2020)]. Conceptually, the scheme is based on the idea that aphysical monolayer optical…

We present results on a series of 2D atomistic computer simulations of amorphous systems subjected to simple shear in the athermal, quasistatic limit. The athermal quasistatic trajectories are shown to separate into smooth, reversible…

Soft Condensed Matter · Physics 2016-08-16 Craig E. Maloney , Anaël Lemaître

A systematic study of $\gamma$-bands observed in atomic nuclei is performed using the triaxial projected shell model (TPSM) approach. The staggering phase between the even and odd spin members of the $\gamma$-band for most the nuclei…

Nuclear Theory · Physics 2021-11-24 S. Jehangir , G. H. Bhat , J. A. Sheikh , S. Frauendorf , W. Li , R. Palit

Shortly after the determination of the first protein x-ray crystal structures, researchers analyzed their cores and reported packing fractions $\phi \approx 0.75$, a value that is similar to close packing equal-sized spheres. A limitation…

Biomolecules · Quantitative Biology 2016-04-06 Jennifer C. Gaines , W. Wendell Smith , Lynne Regan , Corey S. O'Hern

Vibrational spectra of proteins and topologically disordered solids display a common anomaly at low frequencies, known as Boson peak. We show that such feature in globular proteins can be deciphered in terms of an energy landscape picture,…

Soft Condensed Matter · Physics 2007-05-23 Stefano Ciliberti , Paolo De Los Rios , Francesco Piazza

Quasicrystals are unique materials characterized by long-range order without periodicity. They are observed in systems such as metallic alloys, soft matter, and particle simulations. Unlike periodic crystals, which are invariant under…

Computational Physics · Physics 2024-11-14 Nydia Roxana Varela-Rosales , Michael Engel

The structures of odd-odd $N=Z$ nuclei in the lower \emph{fp} shell have been investigated with a new isospin-nonconserving microscopical interaction. The interaction is derived from a high-precision charge-dependent Bonn nucleon-nucleon…

Nuclear Theory · Physics 2008-11-26 C. Qi , F. R. Xu

We study snapping and shaky polyhedra which consist of antiprismatic skeletons covered by polyhedral belts composed of triangular faces only. In detail, we generalize Wunderlich's trisymmetric sandglass polyhedron in analogy to the…

Metric Geometry · Mathematics 2022-03-09 Georg Nawratil

The Automated Protein Structure Analysis (APSA) method is used for the classification of supersecondary structures. Basis for the classification is the encoding of three-dimensional (3D) residue conformations into a 16-letter code (3D-1D…

Quantitative Methods · Quantitative Biology 2008-11-24 Sushilee Ranganathan , Dmitry Izotov , Elfi Kraka , Dieter Cremer

Two-dimensional colloidal suspensions subject to laser interference patterns with decagonal symmetry can form an Archimedean-like tiling phase where rows of squares and triangles order aperiodically along one direction [J. Mikhael et al.,…

Despite the variety of protein sizes, shapes, and backbone configurations found in nature, the design of novel protein folds remains an open problem. Within simple lattice models it has been shown that all structures are not equally…

Soft Condensed Matter · Physics 2016-08-31 J. Miller , C. Zeng , N. S. Wingreen , C. Tang

Quantum anomalous Hall insulator (QAH)/$s$-wave superconductor (SC) hybrid systems are known to be an ideal platform for realizing two-dimensional topological superconductors with chiral Majorana edge modes. In this paper we study…

Mesoscale and Nanoscale Physics · Physics 2021-11-09 Ryoi Ohashi , Shingo Kobayashi , Yukio Tanaka

Amorphous materials are integral part of todays technology, they commonly are performant and versatile in integration. Consequently, future applications increasingly aim to harvest the potential of the amorphous state. Establishing its…

Proteinoids, as soft matter fluidic systems, are computational substrates that have been recently proposed for their analog computing capabilities. Such systems exhibit oscillatory electrical activity because of cationic and anionic…

We use theory and numerical computation to determine the shape of an axisymmetric fluid membrane with a resistance to bending and constant area. The membrane connects two rings in the classic geometry that produces a catenoidal shape in a…

Soft Condensed Matter · Physics 2021-08-12 Leroy L. Jia , Steven Pei , Robert A. Pelcovits , Thomas R. Powers
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