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Increasingly, artificial intelligence (AI) and machine learning (ML) are used in eScience applications [9]. While these approaches have great potential, the literature has shown that ML-based approaches frequently suffer from results that…

Machine Learning · Computer Science 2024-07-03 Zhiwei Li , Carl Kesselman , Mike D'Arch , Michael Pazzani , Benjamin Yizing Xu

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

Background: Symbolic models, particularly decision trees, are widely used in software engineering for explainable analytics in defect prediction, configuration tuning, and software quality assessment. Most of these models rely on…

Software Engineering · Computer Science 2026-02-19 Amirali Rayegan , Tim Menzies

Machine learning models are primarily judged by predictive performance, especially in applied settings. Once a model reaches high accuracy, its explanation is often assumed to be correct and trustworthy. This assumption raises an overlooked…

Machine Learning · Computer Science 2026-02-12 Chama Bensmail

Context: Surveys constitute an valuable tool to capture a large-scale snapshot of the state of the practice. Apparently trivial to adopt, surveys hide, however, several pitfalls that might hinder rendering the result valid and, thus,…

Software Engineering · Computer Science 2017-02-27 Marco Torchiano , Daniel Méndez Fernández , Guilherme Horta Travassos , Rafael Maiani de Mello

Context: Successfully addressing stakeholder concerns that are related to software system development and operation is crucial to achieving development goals. The importance of using a systematic approach to addressing these concerns…

Software Engineering · Computer Science 2023-02-14 Sandun Dasanayake , Jouni Markkula , Markku Oivo

While Microservices promise several beneficial characteristics for sustainable long-term software evolution, little empirical research covers what concrete activities industry applies for the evolvability assurance of Microservices and how…

Software Engineering · Computer Science 2021-09-02 Justus Bogner , Jonas Fritzsch , Stefan Wagner , Alfred Zimmermann

As the potential for neural networks to augment our daily lives grows, ensuring their quality through effective testing, debugging, and maintenance is essential. This is especially the case as we acknowledge the prospects of negative…

Software Engineering · Computer Science 2025-07-08 Fatema Tuz Zohra , Brittany Johnson

Background: Software development results in the production of various types of artifacts: source code, version control system metadata, bug reports, mailing list conversations, test data, etc. Empirical software engineering (ESE) has…

Software Engineering · Computer Science 2022-07-19 Zeinab Abou Khalil , Stefano Zacchiroli

Reproducibility is an important requirement in evolutionary computation, where results largely depend on computational experiments. In practice, reproducibility relies on how algorithms, experimental protocols, and artifacts are documented…

Neural and Evolutionary Computing · Computer Science 2026-02-10 Francesca Da Ros , Tarik Začiragić , Aske Plaat , Thomas Bäck , Niki van Stein

Modern LLM agents increasingly create their own tools at runtime -- from Python functions to API clients -- yet existing benchmarks evaluate them almost exclusively by downstream task completion. This is analogous to judging a software…

Software Engineering · Computer Science 2026-04-02 Alibek T. Kaliyev , Artem Maryanskyy

The use of large language models (LLMs) for qualitative analysis is gaining attention in various fields, including software engineering, where qualitative methods are essential for understanding human and social factors. This study aimed to…

Software Engineering · Computer Science 2025-03-11 Matheus de Morais Leça , Lucas Valença , Reydne Santos , Ronnie de Souza Santos

Preserving invariants while designing distributed applications under weak consistency models is difficult. The CEC (Correct Eventual Consistency Tool) is meant to aid the application designer in this task. It provides information about the…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-18 Sreeja Nair , Marc Shapiro

Software systems are getting more complex as the system grows where maintaining such system is a primary concern for the industry. Code clone is one of the factors making software maintenance more difficult. It is a process of replicating…

Software Engineering · Computer Science 2012-05-28 Md. Monzur Morshed , Md. Arifur Rahman , Salah Uddin Ahmed

A bioinformatics platform is introduced aimed at identifying models of disease-specific pathways, as well as a set of network measures that can quantify changes in terms of global structure or single link disruptions.The approach integrates…

Molecular Networks · Quantitative Biology 2012-01-17 A. Barla , S. Riccadonna , S. Masecchia , M. Squillario , M. Filosi , G. Jurman , C. Furlanello

Despite its crucial role in research experiments, code correctness is often presumed only on the basis of the perceived quality of results. This assumption comes with the risk of erroneous outcomes and potentially misleading findings. To…

Computation and Language · Computer Science 2024-07-08 Sara Papi , Marco Gaido , Andrea Pilzer , Matteo Negri

Although agile software development methods have caught the attention of software engineers and researchers worldwide, scientific research still remains quite scarce. The aim of this study is to order and make sense of the different agile…

Software Engineering · Computer Science 2019-03-27 Pekka Abrahamsson , Nilay Oza , Mikko T. Siponen

This paper reports the use of a qualitative methodology for conducting longitudinal case study research on software development. We provide a detailed description and explanation of appropriate methods of qualitative data collection and…

Software Engineering · Computer Science 2021-01-22 Laurie McLeod , Stephen G. MacDonell , Bill Doolin

More and more distributed software systems are being developed and deployed today. Like other software, distributed software systems also need very strong quality assurance support. Distributed software is often very large/complex, has…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-08 Xiaoqin Fu

Naming is very important in software development, as names are often the only vehicle of meaning about what the code is intended to do. A recent study on how developers choose names collected the names given by different developers for the…

Software Engineering · Computer Science 2024-02-16 Rachel Alpern , Ido Lazer , Issar Tzachor , Hanit Hakim , Sapir Weissbuch , Dror G. Feitelson