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The integration of knowledge graphs and graph machine learning (GML) in genomic data analysis offers several opportunities for understanding complex genetic relationships, especially at the RNA level. We present a comprehensive approach for…

Artificial Intelligence · Computer Science 2024-08-06 Shivika Prasanna , Ajay Kumar , Deepthi Rao , Eduardo Simoes , Praveen Rao

Knowledge graphs (KGs) such as DBpedia, Freebase, YAGO, Wikidata, and NELL were constructed to store large-scale, real-world facts as (subject, predicate, object) triples -- that can also be modeled as a graph, where a node (a subject or an…

Databases · Computer Science 2023-05-25 Arijit Khan

Sources of commonsense knowledge support applications in natural language understanding, computer vision, and knowledge graphs. Given their complementarity, their integration is desired. Yet, their different foci, modeling approaches, and…

Artificial Intelligence · Computer Science 2021-03-24 Filip Ilievski , Pedro Szekely , Bin Zhang

Large language models (LLMs) often produce fluent reasoning steps while violating simple mathematical or logical constraints. We introduce MedRule-KG, a compact typed knowledge graph coupled with a symbolic verifier, designed to enforce…

Artificial Intelligence · Computer Science 2025-12-15 Crystal Su

Large language models appear to learn facts from the large text corpora they are trained on. Such facts are encoded implicitly within their many parameters, making it difficult to verify or manipulate what knowledge has been learned.…

Computation and Language · Computer Science 2022-10-27 Yifan Hou , Wenxiang Jiao , Meizhen Liu , Carl Allen , Zhaopeng Tu , Mrinmaya Sachan

The availability of vast amounts of visual data with heterogeneous features is a key factor for developing, testing, and benchmarking of new computer vision (CV) algorithms and architectures. Most visual datasets are created and curated for…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Jicheng Yuan , Anh Le-Tuan , Manh Nguyen-Duc , Trung-Kien Tran , Manfred Hauswirth , Danh Le-Phuoc

Knowledge graph completion (KGC) aims to infer new knowledge and make predictions from knowledge graphs. Recently, large language models (LLMs) have exhibited remarkable reasoning capabilities. LLM-enhanced KGC methods primarily focus on…

Computation and Language · Computer Science 2025-09-03 Yu Liu , Yanan Cao , Xixun Lin , Yanmin Shang , Shi Wang , Shirui Pan

Large Language Models (LLMs) have revolutionized Natural Language Processing (NLP) based applications including automated text generation, question answering, chatbots, and others. However, they face a significant challenge: hallucinations,…

Computation and Language · Computer Science 2024-11-22 Ernests Lavrinovics , Russa Biswas , Johannes Bjerva , Katja Hose

Artificial intelligence (AI) is reshaping modern healthcare by advancing disease diagnosis, treatment decision-making, and biomedical research. Among AI technologies, large language models (LLMs) have become especially impactful, enabling…

Artificial Intelligence · Computer Science 2025-11-18 Zhengda Wang , Daqian Shi , Jingyi Zhao , Xiaolei Diao , Xiongfeng Tang , Yanguo Qin

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities in representing and understanding diverse modalities. However, they typically focus on modality alignment in a pairwise manner while overlooking structural…

Machine Learning · Computer Science 2025-06-13 Jiajin Liu , Dongzhe Fan , Jiacheng Shen , Chuanhao Ji , Daochen Zha , Qiaoyu Tan

Large language models (LLMs) have attracted growing interest as supportive tools for psychiatric assessment and clinical decision support. However, existing mental health benchmarks largely rely on social media data or supportive dialogue…

Computation and Language · Computer Science 2026-05-19 Hoyun Song , Migyeong Kang , Jisu Shin , Jihyun Kim , Chanbi Park , Hangyeol Yoo , Jihyun An , Alice Oh , Jinyoung Han , KyungTae Lim

Integrating Large Language Models (LLMs) with Knowledge Graphs (KGs) results in complex systems with numerous hyperparameters that directly affect performance. While such systems are increasingly common in retrieval-augmented generation,…

Artificial Intelligence · Computer Science 2025-06-02 Vasilije Markovic , Lazar Obradovic , Laszlo Hajdu , Jovan Pavlovic

Knowledge graphs (KGs) are increasingly utilized for data integration, representation, and visualization. While KG population is critical, it is often costly, especially when data must be extracted from unstructured text in natural…

Artificial Intelligence · Computer Science 2024-11-05 Sanaz Saki Norouzi , Adrita Barua , Antrea Christou , Nikita Gautam , Andrew Eells , Pascal Hitzler , Cogan Shimizu

Knowledge Graphs (KGs) are foundational structures in many AI applications, representing entities and their interrelations through triples. However, triple-based KGs lack the contextual information of relational knowledge, like temporal…

Artificial Intelligence · Computer Science 2024-07-01 Chengjin Xu , Muzhi Li , Cehao Yang , Xuhui Jiang , Lumingyuan Tang , Yiyan Qi , Jian Guo

Large Language Models (LLMs) have been increasingly studied as neural knowledge bases for supporting knowledge-intensive applications such as question answering and fact checking. However, the structural organization of their knowledge…

Machine Learning · Computer Science 2026-01-16 Utkarsh Sahu , Zhisheng Qi , Mahantesh Halappanavar , Nedim Lipka , Ryan A. Rossi , Franck Dernoncourt , Yu Zhang , Yao Ma , Yu Wang

In the investment industry, it is often essential to carry out fine-grained company similarity quantification for a range of purposes, including market mapping, competitor analysis, and mergers and acquisitions. We propose and publish a…

As the field of Large Language Models (LLMs) evolves at an accelerated pace, the critical need to assess and monitor their performance emerges. We introduce a benchmarking framework focused on knowledge graph engineering (KGE) accompanied…

Artificial Intelligence · Computer Science 2023-09-01 Lars-Peter Meyer , Johannes Frey , Kurt Junghanns , Felix Brei , Kirill Bulert , Sabine Gründer-Fahrer , Michael Martin

Question Answering over Knowledge Graph (KGQA) aims to seek answer entities for the natural language question from a large-scale Knowledge Graph~(KG). To better perform reasoning on KG, recent work typically adopts a pre-trained language…

Computation and Language · Computer Science 2024-01-02 Jinhao Jiang , Kun Zhou , Wayne Xin Zhao , Yaliang Li , Ji-Rong Wen

Knowledge graphs (KGs) are a popular way to organise information based on ontologies or schemas and have been used across a variety of scenarios from search to recommendation. Despite advances in KGs, representing knowledge remains a…

Artificial Intelligence · Computer Science 2023-10-10 Christos Theodoropoulos , Natasha Mulligan , Thaddeus Stappenbeck , Joao Bettencourt-Silva

The core of the Knowledge Graph Completion (KGC) task is to predict and complete the missing relations or nodes in a KG. Common KGC tasks are mostly about inferring unknown elements with one or two elements being known in a triple. In…

Computation and Language · Computer Science 2024-12-25 Yuan Yuan , Yajing Xu , Wen Zhang
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