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Constructing of molecular structural models from Cryo-Electron Microscopy (Cryo-EM) density volumes is the critical last step of structure determination by Cryo-EM technologies. Methods have evolved from manual construction by structural…

Machine Learning · Computer Science 2019-02-13 Kui Xu , Zhe Wang , Jiangping Shi , Hongsheng Li , Qiangfeng Cliff Zhang

We present a cosmology analysis of simulated weak lensing convergence maps using the Neural Field Scattering Transform (NFST) to constrain cosmological parameters. The NFST extends the Wavelet Scattering Transform (WST) by incorporating…

Cosmology and Nongalactic Astrophysics · Physics 2025-06-11 Matthew Craigie , Yuan-Sen Ting , Rossana Ruggeri , Tamara M. Davis

The gravitationally-driven evolution of cold dark matter dominates the formation of structure in the Universe over a wide range of length scales. While the longest scales can be treated by perturbation theory, a fully quantitative…

Astrophysics · Physics 2009-11-10 Katrin Heitmann , Paul M. Ricker , Michael S. Warren , Salman Habib

Deep learning models for medical data are typically trained using task specific objectives that encourage representations to collapse onto a small number of discriminative directions. While effective for individual prediction problems, this…

Machine Learning · Computer Science 2026-02-10 Yuanyun Zhang , Mingxuan Zhang , Siyuan Li , Zihan Wang , Haoran Chen , Wenbo Zhou , Shi Li

Almost all work to understand Earth's subsurface on a large scale relies on the interpretation of seismic surveys by experts who segment the survey (usually a cube) into layers; a process that is very time demanding. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2019-05-14 Daniel Civitarese , Daniela Szwarcman , Emilio Vital Brazil , Bianca Zadrozny

The U-Net architecture, built upon the fully convolutional network, has proven to be effective in biomedical image segmentation. However, U-Net applies skip connections to merge semantically different low- and high-level convolutional…

Image and Video Processing · Electrical Eng. & Systems 2021-07-28 Hasib Zunair , A. Ben Hamza

Statistical shape modeling is the computational process of discovering significant shape parameters from segmented anatomies captured by medical images (such as MRI and CT scans), which can fully describe subject-specific anatomy in the…

Computer Vision and Pattern Recognition · Computer Science 2023-08-01 Krithika Iyer , Shireen Elhabian

Deep convolutional neural networks (CNN) have recently been shown to generate promising results for aesthetics assessment. However, the performance of these deep CNN methods is often compromised by the constraint that the neural network…

Computer Vision and Pattern Recognition · Computer Science 2017-04-04 Shuang Ma , Jing Liu , Chang Wen Chen

Understanding the structure of the matter distribution in the Universe due to the action of the gravitational instability -- the cosmic web -- is complicated by lack of direct analytic access to the nonlinear domain of structure formation.…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-03 Sergei Shandarin , Salman Habib , Katrin Heitmann

This study addresses the challenge of accurately identifying multi-task contention types in high-dimensional system environments and proposes a unified contention classification framework that integrates representation transformation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-29 Xiao Yang , Yinan Ni , Yuqi Tang , Zhimin Qiu , Chen Wang , Tingzhou Yuan

Accurate and efficient seismic response prediction is essential for the design of resilient structures. While the Finite Element Method (FEM) remains the standard for nonlinear seismic analysis, its high computational demands limit its…

Machine Learning · Computer Science 2026-03-06 Sutirtha Biswas , Kshitij Kumar Yadav

In this paper, we present a novel approach to accelerate the Bayesian inference process, focusing specifically on the nested sampling algorithms. Bayesian inference plays a crucial role in cosmological parameter estimation, providing a…

Instrumentation and Methods for Astrophysics · Physics 2024-10-17 Isidro Gómez-Vargas , J. Alberto Vázquez

In current biological and medical research, statistical shape modeling (SSM) provides an essential framework for the characterization of anatomy/morphology. Such analysis is often driven by the identification of a relatively small number of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-16 Riddhish Bhalodia , Shireen Elhabian , Ladislav Kavan , Ross Whitaker

Weak gravitational lensing is a powerful probe of the large-scale cosmic matter distribution. Wide-field galaxy surveys allow us to generate the so-called weak lensing maps, but actual observations suffer from noise due to imperfect…

Cosmology and Nongalactic Astrophysics · Physics 2019-08-21 Masato Shirasaki , Naoki Yoshida , Shiro Ikeda

Finding a template in a search image is an important task underlying many computer vision applications. Recent approaches perform template matching in a deep feature-space, produced by a convolutional neural network (CNN), which is found to…

Computer Vision and Pattern Recognition · Computer Science 2021-05-10 Bo Gao , M. W. Spratling

This paper addresses the challenges of designing mesh convolution neural networks for 3D mesh dense prediction. While deep learning has achieved remarkable success in image dense prediction tasks, directly applying or extending these…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Shi Hezi , Jiang Luo , Zheng Jianmin , Zeng Jun

Sketch portrait generation benefits a wide range of applications such as digital entertainment and law enforcement. Although plenty of efforts have been dedicated to this task, several issues still remain unsolved for generating vivid and…

Computer Vision and Pattern Recognition · Computer Science 2017-10-05 Dongyu Zhang , Liang Lin , Tianshui Chen , Xian Wu , Wenwei Tan , Ebroul Izquierdo

We present a convolutional neural network to classify distinct cosmological scenarios based on the statistically similar weak-lensing maps they generate. Modified gravity (MG) models that include massive neutrinos can mimic the standard…

Cosmology and Nongalactic Astrophysics · Physics 2019-07-17 Austin Peel , Florian Lalande , Jean-Luc Starck , Valeria Pettorino , Julian Merten , Carlo Giocoli , Massimo Meneghetti , Marco Baldi

Many deep neural networks are built by using stacked convolutional layers of fixed and single size (often 3$\times$3) kernels. This paper describes a method for training the size of convolutional kernels to provide varying size kernels in a…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 F. Boray Tek , İlker Çam , Deniz Karlı

The caustic skeleton model is a mathematically rigorous framework for studying the formation history of the emerging cosmic web from the caustics in the underlying dark matter flow. In a series of two papers, we use constrained N-body…

Cosmology and Nongalactic Astrophysics · Physics 2025-10-06 Benjamin Hertzsch , Job Feldbrugge , Maé Rodriguez , Rien van de Weygaert