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Photomultiplier tubes (PMTs) are widely employed in particle and nuclear physics experiments. The accuracy of PMT waveform reconstruction directly impacts the detector's spatial and energy resolution. A key challenge arises when multiple…

High Energy Physics - Experiment · Physics 2026-02-06 Kainan Liu , Jingyu Huang , Guihong Huang , Jianyi Luo

Text-conditioned generative models for volumetric medical imaging provide semantic control but lack explicit anatomical guidance, often resulting in outputs that are spatially ambiguous or anatomically inconsistent. In contrast,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Daniele Molino , Camillo Maria Caruso , Paolo Soda , Valerio Guarrasi

We report a flexible language-model based deep learning strategy, applied here to solve complex forward and inverse problems in protein modeling, based on an attention neural network that integrates transformer and graph convolutional…

Biomolecules · Quantitative Biology 2023-10-20 Markus J. Buehler

Despite recent advances, goal-directed generation of structured discrete data remains challenging. For problems such as program synthesis (generating source code) and materials design (generating molecules), finding examples which satisfy…

Machine Learning · Computer Science 2020-10-26 Amina Mollaysa , Brooks Paige , Alexandros Kalousis

Medical vision-language pre-training shows great potential in learning representative features from massive paired radiographs and reports. However, in computed tomography (CT) scans, the distribution of lesions which contain intricate…

Computer Vision and Pattern Recognition · Computer Science 2025-09-11 Rongsheng Wang , Fenghe Tang , Qingsong Yao , Rui Yan , Xu Zhang , Zhen Huang , Haoran Lai , Zhiyang He , Xiaodong Tao , Zihang Jiang , Shaohua Kevin Zhou

RNA plays a pivotal role in diverse biological processes, ranging from gene regulation to catalysis. Recent advances in RNA design, such as RfamGen, Ribodiffusion and RDesign, have demonstrated promising results, with successful designs of…

Biomolecules · Quantitative Biology 2025-03-11 Letian Gao , Zhi John Lu

To coordinate the interests of operator and users in a microgrid under complex and changeable operating conditions, this paper proposes a microgrid scheduling model considering the thermal flexibility of thermostatically controlled loads…

Systems and Control · Electrical Eng. & Systems 2024-12-25 Yang Li , Jiankai Gao , Yuanzheng Li , Chen Chen , Sen Li , Mohammad Shahidehpour , Zhe Chen

Examination of T-cell receptor (TCR) clonality has become a way of understanding immunologic response to cancer and its interventions in recent years. An aspect of these analyses is determining which receptors expand or contract…

Quantitative Methods · Quantitative Biology 2026-01-09 David Swanson , Alexander Sherry , Cara Haymaker , Alexandre Reuben , Chad Tang

Learning representations of molecular structures using deep learning is a fundamental problem in molecular property prediction tasks. Molecules inherently exist in the real world as three-dimensional structures; furthermore, they are not…

Machine Learning · Computer Science 2024-01-22 Daiki Koge , Naoaki Ono , Shigehiko Kanaya

Target proteins that lack accessible binding pockets and conformational stability have posed increasing challenges for drug development. Induced proximity strategies, such as PROTACs and molecular glues, have thus gained attention as…

In many web applications, deep learning-based CTR prediction models (deep CTR models for short) are widely adopted. Traditional deep CTR models learn patterns in a static manner, i.e., the network parameters are the same across all the…

Information Retrieval · Computer Science 2023-12-13 Bencheng Yan , Pengjie Wang , Kai Zhang , Feng Li , Hongbo Deng , Jian Xu , Bo Zheng

The imperfect modeling of ternary complexes has limited the application of computer-aided drug discovery tools in PROTAC research and development. In this study, an AI-assisted approach for PROTAC molecule design pipeline named LM-PROTAC…

Quantitative Methods · Quantitative Biology 2024-12-16 Jinsong Shao , Qineng Gong , Zeyu Yin , Yu Chen , Yajie Hao , Lei Zhang , Linlin Jiang , Min Yao , Jinlong Li , Fubo Wang , Li Wang

Large language models (LLMs) are widely applied in various natural language processing tasks such as question answering and machine translation. However, due to the lack of labeled data and the difficulty of manual annotation for…

Artificial Intelligence · Computer Science 2026-05-27 Xuan Lin , Long Chen , Yile Wang , Yangyang Chen , Xiangxiang Zeng

Stochastic process-based molecular graph generators have become the state of the art for template-free single-step retrosynthesis. However, these models are typically trained only on product-reactant pairs, thereby acquiring…

Machine Learning · Computer Science 2026-05-26 Jiahai Huang , Anjie Qiao , Zhen Wang , Defu Lian , Yutong Lu

In the medical field, the limited availability of large-scale datasets and labor-intensive annotation processes hinder the performance of deep models. Diffusion-based generative augmentation approaches present a promising solution to this…

Computer Vision and Pattern Recognition · Computer Science 2026-02-19 Xinrui Zhou , Yuhao Huang , Haoran Dou , Shijing Chen , Ao Chang , Jia Liu , Weiran Long , Jian Zheng , Erjiao Xu , Jie Ren , Alejandro F. Frangi , Ruobing Huang , Jun Cheng , Xiaomeng Li , Wufeng Xue , Dong Ni

Proteins are essential components of all living organisms and play a critical role in cellular survival. They have a broad range of applications, from clinical treatments to material engineering. This versatility has spurred the development…

Applications · Statistics 2025-03-28 Chenyu Ren , Daihai He , Jian Huang

Electrocardiography (ECG) is the clinical standard for cardiac assessment but requires dedicated hardware that does not scale to daily-life monitoring. Photoplethysmography (PPG) is ubiquitous in wearables but lacks ECG-specific diagnostic…

Signal Processing · Electrical Eng. & Systems 2026-05-14 Xiaoda Wang , Minxiao Wang , Kaiqiao Han , Defu Cao , Ching Chang , Yidan Shi , Runze Yan , Xiao Luo , Yan Liu , Xiao Hu , Yizhou Sun , Wei Wang , Carl Yang

While recent advancements in speech language models have achieved significant progress, they face remarkable challenges in modeling the long acoustic sequences of neural audio codecs. In this paper, we introduce \textbf{G}enerative…

Computation and Language · Computer Science 2024-11-04 Yongxin Zhu , Dan Su , Liqiang He , Linli Xu , Dong Yu

Non-contrast CT (NCCT) imaging may reduce image contrast and anatomical visibility, potentially increasing diagnostic uncertainty. In contrast, contrast-enhanced CT (CECT) facilitates the observation of regions of interest (ROI). Leading…

Image and Video Processing · Electrical Eng. & Systems 2024-11-18 Tingyi Lin , Pengju Lyu , Jie Zhang , Yuqing Wang , Cheng Wang , Jianjun Zhu

Integrating histopathology with spatial transcriptomics (ST) provides a powerful opportunity to link tissue morphology with molecular function. Yet most existing multimodal approaches rely on a small set of highly variable genes, which…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Sejuti Majumder , Saarthak Kapse , Moinak Bhattacharya , Xuan Xu , Alisa Yurovsky , Prateek Prasanna