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Using Monte Carlo model of biological evolution we have discovered that populations can switch between two different strategies of their genomes' evolution; Darwinian purifying selection and complementing the haplotypes. The first one is…

Populations and Evolution · Quantitative Biology 2009-11-13 Marta Zawierta , Wojciech Waga , Dorota Mackiewicz , Przemyslaw Biecek , Stanislaw Cebrat

A natural experiment is a type of observational study in which treatment assignment, though not randomized by the investigator, is plausibly close to random. A process that assigns treatments in a highly nonrandom, inequitable manner may,…

Applications · Statistics 2015-01-20 José R. Zubizarreta , Dylan S. Small , Paul R. Rosenbaum

A microscopic agent dynamical model for diploid age-structured populations is used to study evolution of polymorphism and sympatric speciation. The underlying ecology is represented by a unimodal distribution of resources of some width.…

Populations and Evolution · Quantitative Biology 2015-06-26 E. Brigatti , J. S. Sa' Martins , I. Roditi

This paper is concerned with a natural variant of the contact process modeling the spread of knowledge on the integer lattice. Each site is characterized by its knowledge, measured by a real number ranging from 0 = ignorant to 1 =…

Probability · Mathematics 2025-03-24 Nicolas Lanchier , Max Mercer , Hyunsik Yun

In a Bienaym\'{e}-Galton-Watson process for which there is a positiveprobability for individuals of having no offspring, there is a subtlebalance and dependence between the sterile nodes (the dead nodes or leaves)and the prolific ones (the…

Probability · Mathematics 2023-02-17 Thierry Huillet , Servet Martinez

We study the evolution of offspring sex ratios using a game-theoretical model in which the decision to have another child depends on the sex of the previous child. Motivated by higher male infant mortality and the tendency to try again…

Physics and Society · Physics 2025-07-16 Nahyeon Lee , Ulf Dieckmann , Hyeong-Chai Jeong

We extend the spatial $\Lambda$-Fleming-Viot process introduced in [Electron. J. Probab. 15 (2010) 162-216] to incorporate recombination. The process models allele frequencies in a population which is distributed over the two-dimensional…

Probability · Mathematics 2012-11-28 A. M. Etheridge , A. Véber

Sex determination in the order Hymenoptera is based on arrhenotoky, hymenopteran males are usually haploid and females diploid. Males of the Ichneumonidae Diadromus pulchellus, solitary endoparasitoid of A. assectella pupae are normally…

Populations and Evolution · Quantitative Biology 2016-08-16 Robert Kalmès , Danielle Rojas-Rousse

Multitype branching processes are ideal for studying the population dynamics of stem cell populations undergoing mutation accumulation over the years following transplant. In such stochastic models, several quantities are of clinical…

Populations and Evolution · Quantitative Biology 2021-11-17 Timothy C Stutz , Janet S. Sinsheimer , Mary Sehl , Jason Xu

The contact process with an asymptomatic state, introduced in [Belhadji, Lanchier and Mercer, Stochastic Process. Appl., 176:104417, 2024], is a natural variant of the basic contact process that distinguishes between asymptomatic (state 1)…

Probability · Mathematics 2025-10-27 Nicolas Lanchier

Despite its radical assumption of ecological equivalence between species, neutral biodiversity theory can often provide good fits to species abundance distributions observed in nature. Major criticisms of neutral theory have focused on…

Populations and Evolution · Quantitative Biology 2017-06-28 Rafael D'Andrea , James P. O'Dwyer

A host-parasite model is considered for a population of cells that can be of two types, A or B, and exhibits unilateral reproduction: while a B-cell always splits into two cells of the same type, the two daughter cells of an A-cell can be…

Probability · Mathematics 2013-02-06 Gerold Alsmeyer , Sören Gröttrup

Stochastic models that incorporate birth, death and immigration (also called birth-death and innovation models) are ubiquitous and applicable to many research topics such as quantifying species sizes in ecological populations, describing…

Populations and Evolution · Quantitative Biology 2026-05-12 Renaud Dessalles , Maria D'Orsogna , Tom Chou

A method yielding simple relationships among bilateral birth-and-death processes is outlined. This allows one to relate birth and death rates of two processes in such a way that their transition probabilities, first-passage-time densities…

Probability · Mathematics 2008-03-11 Antonio Di Crescenzo

We consider the spatially inhomogeneous Moran model with seed-banks introduced in den Hollander and Nandan (2021). Populations comprising $active$ and $dormant$ individuals are structured in colonies labelled by $\mathbb{Z}^d,~d\geq 1$. The…

Probability · Mathematics 2023-02-23 Shubhamoy Nandan

This paper is concerned with a stochastic model for the spread of an SEIR (susceptible -> exposed (=latent) -> infective -> removed) epidemic with a contact tracing scheme, in which removed individuals may name some of their infectious…

Probability · Mathematics 2015-12-08 Frank G Ball , Edward S Knock , Philip D O'Neill

Allelopathy refers to a type $0/-$ biological interaction that is neutral for a so-called inhibitory species but detrimental for a so-called susceptible species. To model this type of interaction in a spatially-structured environment,…

Probability · Mathematics 2023-05-29 Nicolas Lanchier , Max Mercer

The pair contact process (PCP) is a nonequilibrium stochastic model which, like the basic contact process (CP), exhibits a phase transition to an absorbing state. The two models belong to the directed percolation (DP) universality class,…

Statistical Mechanics · Physics 2015-05-27 F. L. Santos , Ronald Dickman , U. L. Fulco

During bouts of evolutionary diversification, such as adaptive radiations, the emerging species cluster around different locations in phenotype space, How such multimodal patterns in phenotype space can emerge from a single ancestral…

Populations and Evolution · Quantitative Biology 2007-11-19 Michael Doebeli , Hendrik J. Blok , Olof Leimar , Ulf Dieckmann

The theory of lithopanspermia proposes the natural exchange of organisms between solar system bodies through meteorites. The focus of this theory comprises three distinct stages: planetary ejection, interplanetary transit and planetary…

Popular Physics · Physics 2020-08-05 Ian von Hegner