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Extended-connectivity fingerprints (ECFPs) are a ubiquitous tool in current cheminformatics and molecular machine learning, and one of the most prevalent molecular feature extraction techniques used for chemical prediction. Atom features…

Machine Learning · Computer Science 2025-05-05 Markus Dablander , Thierry Hanser , Renaud Lambiotte , Garrett M. Morris

Molecular Graph Neural Networks (GNNs) are increasingly common in drug discovery, particularly for Quantitative Structure-Activity Relationship (QSAR) studies; yet, their superiority compared to classical molecular featurisation approaches…

Machine Learning · Computer Science 2026-05-12 Sam Money-Kyrle , Markus Dablander , Thierry Hanser , Stephane Werner , Charlotte M. Deane , Garrett M. Morris

Understanding peptide properties is often assumed to require modeling long-range molecular interactions, motivating the use of complex graph neural networks and pretrained transformers. Yet, whether such long-range dependencies are…

Biomolecules · Quantitative Biology 2026-03-11 Jakub Adamczyk , Piotr Ludynia , Wojciech Czech

Molecular fingerprints, i.e. feature vectors describing atomistic neighborhood configurations, is an important abstraction and a key ingredient for data-driven modeling of potential energy surface and interatomic force. In this paper, we…

Computational Engineering, Finance, and Science · Computer Science 2018-02-14 Yu-Hang Tang , Dongkun Zhang , George Em Karniadakis

Introduction: The blood-brain barrier (BBB) protects the central nervous system but prevents most neurotherapeutics from reaching effective concentrations in the brain. BBB-penetrating peptides (BBBPs) offer a promising strategy for brain…

Quantitative Methods · Quantitative Biology 2025-12-15 Kaijie Wang , Le Yin , Aodi Tian , Zhiqiang Wei , Zai Yang , Min Han , Qichun Wei , Sheng Wang

Understanding of the pathophysiology of obstructive lung disease (OLD) is limited by available methods to examine the relationship between multi-omic molecular phenomena and clinical outcomes. Integrative factorization methods for…

Methodology · Statistics 2022-12-01 Sarah Samorodnitsky , Chris H. Wendt , Eric F. Lock

Non--Contact Atomic Force Microscopy with CO--functionalized metal tips (referred to as HR-AFM) provides access to the internal structure of individual molecules adsorbed on a surface with totally unprecedented resolution. Previous works…

Fingerprint authentication is widely used in biometrics due to its simple process, but it is vulnerable to fake fingerprints. This study proposes a patch-based fake fingerprint detection method using a fully convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2018-03-22 Eunsoo Park , Xuenan Cui , Weonjin Kim , Jinsong Liu , Hakil Kim

Block-Term Tensor Regression (BTTR) has proven to be a powerful tool for modeling complex, high-dimensional data by leveraging multilinear relationships, making it particularly well-suited for applications in healthcare and neuroscience.…

Machine Learning · Computer Science 2024-12-11 Axel Faes , Ashkan Pirmani , Yves Moreau , Liesbet M. Peeters

Facial landmark localization plays a critical role in face recognition and analysis. In this paper, we propose a novel cascaded backbone-branches fully convolutional neural network~(BB-FCN) for rapidly and accurately localizing facial…

Computer Vision and Pattern Recognition · Computer Science 2018-12-11 Lingbo Liu , Guanbin Li , Yuan Xie , Yizhou Yu , Qing Wang , Liang Lin

One of the most challenging problems in fingerprint recognition continues to be establishing the identity of a suspect associated with partial and smudgy fingerprints left at a crime scene (i.e., latent prints or fingermarks). Despite the…

Computer Vision and Pattern Recognition · Computer Science 2023-09-11 Steven A. Grosz , Anil K. Jain

The conditional particle filter (CPF) is a promising algorithm for general hidden Markov model smoothing. Empirical evidence suggests that the variant of CPF with backward sampling (CBPF) performs well even with long time series. Previous…

Computation · Statistics 2019-08-29 Anthony Lee , Sumeetpal S. Singh , Matti Vihola

Fingerprint classification is one of the most common approaches to accelerate the identification in large databases of fingerprints. Fingerprints are grouped into disjoint classes, so that an input fingerprint is compared only with those…

Computer Vision and Pattern Recognition · Computer Science 2017-05-16 Daniel Peralta , Isaac Triguero , Salvador García , Yvan Saeys , Jose M. Benitez , Francisco Herrera

Computational molecular representations underpin virtual screening, property prediction, and materials discovery. Conventional fingerprints are efficient and deterministic but lose structural information through hash-based compression,…

Machine Learning · Computer Science 2026-05-01 Jonas Teufel , Luca Torresi , André Eberhard , Pascal Friederich

Accurate prediction of antibody-binding sites (epitopes) on antigens is crucial for vaccine design, immunodiagnostics, therapeutic antibody development, antibody engineering, research into autoimmune and allergic diseases, and advancing our…

Biomolecules · Quantitative Biology 2025-12-24 Zhangyu You , Jiahao Ma , Hongzong Li , Ye-Fan Hu , Jian-Dong Huang

Marking anatomical landmarks in cephalometric radiography is a critical operation in cephalometric analysis. Automatically and accurately locating these landmarks is a challenging issue because different landmarks require different levels…

Computer Vision and Pattern Recognition · Computer Science 2019-08-26 Runnan Chen , Yuexin Ma , Nenglun Chen , Daniel Lee , Wenping Wang

Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the…

Machine Learning · Computer Science 2023-10-31 Kha-Dinh Luong , Ambuj Singh

We propose IrisFP, a novel adversarial-example-based model fingerprinting framework that enhances both uniqueness and robustness by leveraging multi-boundary characteristics, multi-sample behaviors, and fingerprint discriminative power…

Cryptography and Security · Computer Science 2026-03-31 Ziye Geng , Guang Yang , Yihang Chen , Changqing Luo

Fingerprint recognition systems stand as pillars in the realm of biometric authentication, providing indispensable security measures across various domains. This study investigates integrating Convolutional Neural Networks (CNNs) with Gabor…

Computer Vision and Pattern Recognition · Computer Science 2024-12-20 Temirlan Meiramkhanov , Arailym Tleubayeva

The back-focal plane (BFP) of a high-numerical aperture objective contains the fluoro-phore radiation pattern, which encodes information about the axial fluorophore position, molecular orientation and the local refractive index of the…

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