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Drug Discovery is a fundamental and ever-evolving field of research. The design of new candidate molecules requires large amounts of time and money, and computational methods are being increasingly employed to cut these costs. Machine…

Machine Learning · Statistics 2021-05-28 Pietro Bongini , Monica Bianchini , Franco Scarselli

Full batch training of Graph Convolutional Network (GCN) models is not feasible on a single GPU for large graphs containing tens of millions of vertices or more. Recent work has shown that, for the graphs used in the machine learning…

Machine Learning · Computer Science 2021-10-19 Muhammed Fatih Balın , Kaan Sancak , Ümit V. Çatalyürek

Generative Flow Networks (GFlowNets) are a new family of probabilistic samplers where an agent learns a stochastic policy for generating complex combinatorial structure through a series of decision-making steps. Despite being inspired from…

Machine Learning · Computer Science 2024-02-20 Dinghuai Zhang , Ling Pan , Ricky T. Q. Chen , Aaron Courville , Yoshua Bengio

The rapid development of quantum computers promises transformative impacts across diverse fields of science and technology. Quantum neural networks (QNNs), as a forefront application, hold substantial potential. Despite the multitude of…

Quantum Physics · Physics 2025-05-20 Lucas Friedrich , Jonas Maziero

Designing efficient quantum circuits is a central bottleneck to exploring the potential of quantum computing, particularly for noisy intermediate-scale quantum (NISQ) devices, where circuit efficiency and resilience to errors are paramount.…

Quantum Physics · Physics 2025-10-31 Jun Dai , Michael Rizvi-Martel , Guillaume Rabusseau

Unitary Synthesis, the decomposition of a unitary matrix into a sequence of quantum gates, is a fundamental challenge in quantum compilation. Prevailing reinforcement learning (RL) approaches are often hampered by sparse reward signals,…

Quantum Physics · Physics 2026-03-05 Inhoe Koo , Hyunho Cha , Jungwoo Lee

RNA plays a pivotal role in diverse biological processes, ranging from gene regulation to catalysis. Recent advances in RNA design, such as RfamGen, Ribodiffusion and RDesign, have demonstrated promising results, with successful designs of…

Biomolecules · Quantitative Biology 2025-03-11 Letian Gao , Zhi John Lu

The neural network and quantum computing are both significant and appealing fields, with their interactive disciplines promising for large-scale computing tasks that are untackled by conventional computers. However, both developments are…

Quantum Physics · Physics 2021-06-22 Feihong Shen , Jun Liu

Graph Neural Networks have recently become a prevailing paradigm for various high-impact graph analytical problems. Existing efforts can be mainly categorized as spectral-based and spatial-based methods. The major challenge for the former…

Machine Learning · Computer Science 2022-02-22 Yushun Dong , Kaize Ding , Brian Jalaian , Shuiwang Ji , Jundong Li

Generative Flow Networks (GFlowNets) were developed to learn policies for efficiently sampling combinatorial candidates by interpreting their generative processes as trajectories in directed acyclic graphs. In the value-based training…

Machine Learning · Computer Science 2026-03-03 Puhua Niu , Shili Wu , Xiaoning Qian

Generative Flow Networks (GFlowNets) are recently proposed models for learning stochastic policies that generate compositional objects by sequences of actions with the probability proportional to a given reward function. The central problem…

Machine Learning · Computer Science 2022-10-03 Anh Do , Duy Dinh , Tan Nguyen , Khuong Nguyen , Stanley Osher , Nhat Ho

Numerical simulators are essential tools in the study of natural fluid-systems, but their performance often limits application in practice. Recent machine-learning approaches have demonstrated their ability to accelerate spatio-temporal…

Fluid Dynamics · Physics 2022-05-06 Mario Lino , Stathi Fotiadis , Anil A. Bharath , Chris Cantwell

In this paper we introduce Curriculum GANs, a curriculum learning strategy for training Generative Adversarial Networks that increases the strength of the discriminator over the course of training, thereby making the learning task…

Machine Learning · Computer Science 2018-07-26 Rishi Sharma , Shane Barratt , Stefano Ermon , Vijay Pande

The rise of cost involved with drug discovery and current speed of which they are discover, underscore the need for more efficient structure-based drug design (SBDD) methods. We employ Generative Flow Networks (GFlowNets), to effectively…

Machine Learning · Computer Science 2024-06-18 Grayson Lee , Tony Shen , Martin Ester

The emergence of artificial intelligence has profoundly impacted computational chemistry, particularly through machine-learned potentials (MLPs), which offer a balance of accuracy and efficiency in calculating atomic energies and forces to…

Chemical Physics · Physics 2024-12-17 Rolf David , Miguel de la Puente , Axel Gomez , Olaia Anton , Guillaume Stirnemann , Damien Laage

Molecular dynamics is a powerful simulation tool to explore material properties. Most of the realistic material systems are too large to be simulated with first-principles molecular dynamics. Classical molecular dynamics has lower…

Computational Physics · Physics 2021-01-11 Zun Wang , Chong Wang , Sibo Zhao , Shiqiao Du , Yong Xu , Bing-Lin Gu , Wenhui Duan

Meshing is a critical, but user-intensive process necessary for stable and accurate simulations in computational fluid dynamics (CFD). Mesh generation is often a bottleneck in CFD pipelines. Adaptive meshing techniques allow the mesh to be…

Machine Learning · Computer Science 2022-12-06 Cooper Lorsung , Amir Barati Farimani

One of the keys for deep learning to have made a breakthrough in various fields was to utilize high computing powers centering around GPUs. Enabling the use of further computing abilities by distributed processing is essential not only to…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-01 Takuya Akiba , Keisuke Fukuda , Shuji Suzuki

Heterogeneous Graph Neural Networks (HGNNs) are a class of deep learning models designed specifically for heterogeneous graphs, which are graphs that contain different types of nodes and edges. This paper investigates the application of…

Machine Learning · Computer Science 2024-05-13 Zhen Hao Wong , Hansi Yang , Xiaoyi Fu , Quanming Yao

Spiking Neural Networks (SNNs) have a greater potential for modeling time series data than Artificial Neural Networks (ANNs), due to their inherent neuron dynamics and low energy consumption. However, it is difficult to demonstrate their…

Neural and Evolutionary Computing · Computer Science 2024-01-22 Chenxi Sun , Hongyan Li , Moxian Song , Derun Can , Shenda Hong