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The reaction-diffusion waves of proteins are known to be involved in fundamental cellular functions, such as cell migration, cell division, and vesicular transportation. In some of these phenomena, pattern formation on the membranes is…

Soft Condensed Matter · Physics 2021-07-16 Naoki Tamemoto , Hiroshi Noguchi

We study the effect of membrane proteins on the shape, composition and thermodynamic stability of the surrounding membrane. When the coupling between membrane composition and curvature is strong enough the nearby composition and shape both…

Soft Condensed Matter · Physics 2015-03-11 S. Alex Rautu , George Rowlands , Matthew S. Turner

The mechanical properties of vertebrate bone are largely determined by a process which involves the complex interplay of three different cell types. This process is called {\it bone remodeling}, and occurs asynchronously at multiple sites…

Tissues and Organs · Quantitative Biology 2011-11-30 Marc Ryser , Svetlana V. Komarova , Nilima Nigam

The growth, form, and division of prebiotic vesicles, membraneous bags of fluid of varying components and shapes is hypothesized to have served as the substrate for the origin of life. The dynamics of these out-of-equilibrium structures is…

Soft Condensed Matter · Physics 2019-07-24 Teresa Ruiz-Herrero , Thomas G. Fai , L. Mahadevan

While the behavior of vesicles in thermodynamic equilibrium has been studied extensively, how active forces control vesicle shape transformations is not understood. Here, we combine theory and simulations to study the shape behavior of…

Soft Condensed Matter · Physics 2019-10-09 Yao Li , Pieter Rein ten Wolde

Theoretical analysis of a suspended nanomechanical membrane subject to an optical driving field in an optomechanical cavity is presented, which is confirmed through numerical simulations. In the presence of an optical field between its…

Quantum Physics · Physics 2016-01-26 Muhammad Javed Akram , Farhan Saif

Utilising Onsager's variational formulation, we derive dynamical equations for the relaxation of a fluid membrane tube in the limit of small deformation, allowing for a contrast of solvent viscosity across the membrane and variations in…

Soft Condensed Matter · Physics 2022-08-30 Sami C. Al-Izzi , Pierre Sens , Matthew S. Turner , Shigeyuki Komura

Mechanics of fluid membranes may be described in terms of the concepts of mechanical deformations and stresses, or in terms of mechanical free-energy functions. In this paper, each of the two descriptions is developed by viewing a membrane…

Soft Condensed Matter · Physics 2009-11-11 Michael A. Lomholt , Ling Miao

We introduce spectral methods for the Ohta-Kawasaki (OK) and Nakazawa-Ohta (NO) models on a spherical domain, examining their coarsening dynamics and equilibrium pattern formations. We employed the Double Fourier Sphere (DFS) method for…

Numerical Analysis · Mathematics 2025-07-29 Wangbo Luo , Yanxiang Zhao

This paper presents a general and robust method for the fluid-structure interaction of membranes and shells undergoing large displacement and large added-mass effects by coupling an immersed-boundary method with a shell finite-element…

Fluid Dynamics · Physics 2023-08-15 Marin Lauber , Gabriel D. Weymouth , Georges Limbert

Biomolecular condensates are formed via liquid-liquid phase separation of proteins, often together with nucleic acids, typically driven by interactions between low-affinity binding sites. The computational study of such condensates that…

Soft Condensed Matter · Physics 2025-01-16 Alena Taskina , Devika Magan , Simon Dannenberg , Stefan Klumpp

We have investigated thermodynamic and dynamic properties as well as the dielectric constant of water-metha\-nol model mixtures in the entire range of composition by using constant pressure molecular dynamics simulations at ambient…

Soft Condensed Matter · Physics 2015-12-25 E. Galicia-Andrés , H. Dominguez , L. Pusztai , O. Pizio

We study the dynamics of orientational phase ordering in fluid membranes. Through numerical simulation we find an unusually slow coarsening of topological texture, which is limited by subdiffusive propagation of membrane curvature. The…

Soft Condensed Matter · Physics 2009-11-07 Nariya Uchida

We determine and compare structural, dynamical, and electronic properties of liquid water at near ambient conditions through density-functional molecular dynamics simulations, when using either plane-wave or atomic-orbital basis sets. In…

Chemical Physics · Physics 2016-09-26 Giacomo Miceli , Jürg Hutter , Alfredo Pasquarello

Self-assembly of protein monomers into distinct membrane protein oligomers provides a general mechanism for diversity in the molecular architectures, and resulting biological functions, of membrane proteins. We develop a general physical…

Biomolecules · Quantitative Biology 2016-11-29 Osman Kahraman , Christoph A. Haselwandter

The promise of innovative applications has triggered the development of many modern technologies capable of exploiting quantum effects. But in addition to future applications, such quantum technologies have already provided us with the…

Quantum Physics · Physics 2016-08-08 Mónica Benito , Carlos Sánchez Muñoz , Carlos Navarrete-Benlloch

The approximation of brittle laws via steeper and steeper cohesive profiles is validated within the mechanical setting of debonding models, which describe the detachment process of a peeled elastic adhesive membrane. In a quasistatic…

Analysis of PDEs · Mathematics 2025-12-16 Filippo Riva

Consider a homogenous fluid membrane, or vesicle, described by the Helfrich-Canham energy, quadratic in the mean curvature. When the membrane is axially symmetric, this energy can be viewed as an `action' describing the motion of a…

Soft Condensed Matter · Physics 2009-11-11 Riccardo Capovilla , Jemal Guven , Efrain Rojas

The dynamics of a spherical elastic capsule, containing a Newtonian fluid bounded by an elastic membrane and immersed in another Newtonian fluid, in a uniform DC electric field is investigated. Discontinuity of electrical properties such as…

Soft Condensed Matter · Physics 2018-06-06 Sudip Das , Rochish M. Thaokar

A thermodynamically consistent phase-field model is introduced for simulating motion and shape transformation of vesicles under flow conditions. In particular, a general slip boundary condition is used to describe the interaction between…

Numerical Analysis · Mathematics 2020-12-11 Lingyue Shen , Zhiliang Xu , Ping Lin , Huaxiong Huang , Shixin Xu
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