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Identifying brain regions that exhibit altered functional connectivity across cognitive or emotional states is a key problem in neuroscience. Existing methods, such as edge-wise testing, seed-based psychophysiological interaction (PPI)…

Methodology · Statistics 2026-02-12 Shira Yoffe , Ziv Ben-Zion , Guy Gurevitch , Talma Hendler , Malka Gorfine , Ariel Jaffe

Covariance estimation is ubiquitous in functional data analysis. Yet, the case of functional observations over multidimensional domains introduces computational and statistical challenges, rendering the standard methods effectively…

Methodology · Statistics 2022-11-02 Soham Sarkar , Victor M. Panaretos

Chromosome classification is critical for karyotyping in abnormality diagnosis. To expedite the diagnosis, we present a novel method named Varifocal-Net for simultaneous classification of chromosome's type and polarity using deep…

Computer Vision and Pattern Recognition · Computer Science 2019-03-21 Yulei Qin , Juan Wen , Hao Zheng , Xiaolin Huang , Jie Yang , Ning Song , Yue-Min Zhu , Lingqian Wu , Guang-Zhong Yang

Facial micro-expressions, characterized by their subtle and brief nature, are valuable indicators of genuine emotions. Despite their significance in psychology, security, and behavioral analysis, micro-expression recognition remains…

Computer Vision and Pattern Recognition · Computer Science 2025-10-16 Luu Tu Nguyen , Vu Tram Anh Khuong , Thi Bich Phuong Man , Thi Duyen Ngo , Thanh Ha Le

One of the central problems in neuroscience is understanding how brain structure relates to function. Naively one can relate the direct connections of white matter fiber tracts between brain regions of interest (ROIs) to the increased…

Neurons and Cognition · Quantitative Biology 2023-08-30 Haoming Yang , Steven Winter , Zhengwu Zhang , David Dunson

Functional Magnetic Resonance Images acquired during resting-state provide information about the functional organization of the brain through measuring correlations between brain areas. Independent components analysis is the reference…

Neurons and Cognition · Quantitative Biology 2014-12-15 Alexandre Abraham , Elvis Dohmatob , Bertrand Thirion , Dimitris Samaras , Gael Varoquaux

In recent years, graph neural networks (GNNs) have been widely applied in the analysis of brain fMRI, yet defining the connectivity between ROIs remains a challenge in noisy fMRI data. Among all approaches, Functional Connectome (FC) is the…

Machine Learning · Computer Science 2025-04-09 Jiyao Wang , Nicha C. Dvornek , Peiyu Duan , Lawrence H. Staib , Pamela Ventola , James S. Duncan

Many functional and structural neuroimaging studies call for accurate morphometric segmentation of different brain structures starting from image intensity values of MRI scans. Current automatic (multi-) atlas-based segmentation strategies…

Image and Video Processing · Electrical Eng. & Systems 2019-09-27 Dennis Bontempi , Sergio Benini , Alberto Signoroni , Michele Svanera , Lars Muckli

Background: Image reconstruction from highly undersampled 4D flow MRI data can be very time consuming and may result in significant underestimation of velocities depending on regularization, thereby limiting the applicability of the method.…

Medical Physics · Physics 2025-04-01 Luuk Jacobs , Marco Piccirelli , Valery Vishnevskiy , Sebastian Kozerke

Automated and accurate segmentation of individual vertebra in 3D CT and MRI images is essential for various clinical applications. Due to the limitations of current imaging techniques and the complexity of spinal structures, existing…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Jian Shi , Tianqi You , Pingping Zhang , Hongli Zhang , Rui Xu , Haojie Li

Functional connectivity (FC) derived from resting-state fMRI is widely used to characterize large-scale brain network alterations in neurological and psychiatric disorders. However, FC construction critically depends on the choice of brain…

Neurons and Cognition · Quantitative Biology 2026-05-11 Minheng Chen , Chao Cao , Jing Zhang , Tianming Liu , Dajiang Zhu

Reliable automatic classification of colonoscopy images is of great significance in assessing the stage of colonic lesions and formulating appropriate treatment plans. However, it is challenging due to uneven brightness, location…

Image and Video Processing · Electrical Eng. & Systems 2022-07-05 Kai-Ni Wang , Yuting He , Shuaishuai Zhuang , Juzheng Miao , Xiaopu He , Ping Zhou , Guanyu Yang , Guang-Quan Zhou , Shuo Li

The idea to estimate the statistical interdependence among (interacting) brain regions has motivated numerous researchers to investigate how the resulting connectivity patterns and networks may organize themselves under any conceivable…

Neurons and Cognition · Quantitative Biology 2021-02-03 Matteo Fraschini , Simone Maurizio La Cava , Luca Didaci , Luigi Barberini

This study proposes a new approach that investigates differences in topological characteristics of visual networks, which are constructed using fMRI BOLD time-series corresponding to visual datasets of COCO, ImageNet, and SUN. A publicly…

Image and Video Processing · Electrical Eng. & Systems 2025-10-29 Debanjali Bhattacharya , Neelam Sinha , Yashwanth R. , Amit Chattopadhyay

Weakly supervised referring expression comprehension(WREC) and segmentation(WRES) aim to learn object grounding based on a given expression using weak supervision signals like image-text pairs. While these tasks have traditionally been…

Computer Vision and Pattern Recognition · Computer Science 2025-05-30 Yang Liu , Silin Cheng , Xinwei He , Sebastien Ourselin , Lei Tan , Gen Luo

The decoding of brain neural networks has been an intriguing topic in neuroscience for a well-rounded understanding of different types of brain disorders and cognitive stimuli. Integrating different types of connectivity, e.g., Functional…

Neurons and Cognition · Quantitative Biology 2023-06-09 Han Yi Chiu , Liang Zhao , Anqi Wu

In MRI-based mental disorder diagnosis, most previous studies focus on functional connectivity network (FCN) derived from functional MRI (fMRI). However, the small size of annotated fMRI datasets restricts its wide application. Meanwhile,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Xingcan Hu , Wei Wang , Li Xiao

Deep complex-valued neural networks (CVNNs) provide a powerful way to leverage complex number operations and representations and have succeeded in several phase-based applications. However, previous networks have not fully explored the…

Image and Video Processing · Electrical Eng. & Systems 2025-03-06 Yanting Yang , Yiren Zhang , Zongyu Li , Jeffery Siyuan Tian , Matthieu Dagommer , Jia Guo

Resting-state functional magnetic resonance imaging (rs-fMRI) offers a non-invasive approach to examining abnormal brain connectivity associated with brain disorders. Graph neural network (GNN) gains popularity in fMRI representation…

Quantitative Methods · Quantitative Biology 2023-08-22 Junhao Zhang , Qianqian Wang , Xiaochuan Wang , Lishan Qiao , Mingxia Liu

Three decades ago, Atick et al. suggested that human frequency sensitivity may emerge from the enhancement required for a more efficient analysis of retinal images. Here we reassess the relevance of low-level vision tasks in the explanation…

Neurons and Cognition · Quantitative Biology 2022-05-24 Qiang Li , Alex Gomez-Villa , Marcelo Bertalmio , Jesus Malo