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The growth of Python adoption across diverse domains has led to increasingly complex codebases, presenting challenges in maintaining code quality. While numerous tools attempt to address these challenges, they often fall short in providing…

Software Engineering · Computer Science 2025-01-31 Karthik Shivashankar , Antonio Martini

JavaScript packages are notoriously prone to bloat, a factor that significantly impacts the performance and maintainability of web applications. While web bundlers and tree-shaking can mitigate this issue in client-side applications,…

Software Engineering · Computer Science 2025-05-22 Yuxin Liu , Deepika Tiwari , Cristian Bogdan , Benoit Baudry

Selecting third-party software packages in open-source ecosystems like Python is challenging due to the large number of alternatives and limited transparent evidence for comparison. Generative AI tools are increasingly used in development…

In this research, we provide a comprehensive empirical summary of the Python Package Repository, PyPI, including both package metadata and source code covering 178,592 packages, 1,745,744 releases, 76,997 contributors, and 156,816,750…

Software Engineering · Computer Science 2019-07-29 Ethan Bommarito , Michael Bommarito

Industry practitioners are increasingly concerned with software that contains vulnerable versions of third-party dependencies that are included both directly and transitively. To address this problem, projects are encouraged to both…

Software Engineering · Computer Science 2025-10-24 Imranur Rahman , Ranindya Paramitha , William Enck , Laurie Williams

Platforms like Stack Overflow and GitHub's gist system promote the sharing of ideas and programming techniques via the distribution of code snippets designed to illustrate particular tasks. Python, a popular and fast-growing programming…

Software Engineering · Computer Science 2019-05-28 Eric Horton , Chris Parnin

Library migration is the process of replacing a library with a similar one in a software project. Manual library migration is time consuming and error prone, as it requires developers to understand the Application Programming Interfaces…

Software Engineering · Computer Science 2026-02-25 Mohayeminul Islam , Ajay Kumar Jha , May Mahmoud , Sarah Nadi

Relying on dependency packages accelerates software development, but it also increases the exposure to security vulnerabilities that may be present in dependencies. While developers have full control over which dependency packages (and…

Software Engineering · Computer Science 2023-10-13 Abbas Javan Jafari , Diego Elias Costa , Ahmad Abdellatif , Emad Shihab

Modern software systems have transitioned from purely code-based architectures to AI-integrated systems where pre-trained models (PTMs) serve as permanent dependencies. However, while the evolution of traditional software libraries is…

Software Engineering · Computer Science 2026-04-21 Peerachai Banyongrakkul , Mansooreh Zahedi , Christoph Treude , Haoyu Gao , Patanamon Thongtanunam

Software projects under version control grow with each commit, accumulating up to hundreds of thousands of commits per repository. Especially for such large projects, the traversal of a repository and data extraction for static source code…

Software Engineering · Computer Science 2022-05-04 Fabian Heseding , Willy Scheibel , Jürgen Döllner

We present pytest-inline, the first inline testing framework for Python. We recently proposed inline tests to make it easier to test individual program statements. But, there is no framework-level support for developers to write inline…

Software Engineering · Computer Science 2023-05-24 Yu Liu , Zachary Thurston , Alan Han , Pengyu Nie , Milos Gligoric , Owolabi Legunsen

PyOD is an open-source Python toolbox for performing scalable outlier detection on multivariate data. Uniquely, it provides access to a wide range of outlier detection algorithms, including established outlier ensembles and more recent…

Machine Learning · Computer Science 2019-06-12 Yue Zhao , Zain Nasrullah , Zheng Li

Python's dynamic typing mechanism, while promoting flexibility, is a significant source of runtime type errors that plague large-scale software, which inspires the automatic type inference techniques. Existing type inference tools have…

Software Engineering · Computer Science 2025-12-29 Shuo Sun , Shixin Zhang , Jiwei Yan , Jun Yan , Jian Zhang

Python applications depend on third-party native libraries that may be vendored within package distributions or installed on the host system. When vulnerabilities are discovered in these native libraries, determining which Python packages…

Current software supply chains heavily rely on open-source packages hosted in public repositories. Given the popularity of ecosystems like npm and PyPI, malicious users started to spread malware by publishing open-source packages containing…

Cryptography and Security · Computer Science 2023-10-17 Piergiorgio Ladisa , Serena Elisa Ponta , Nicola Ronzoni , Matias Martinez , Olivier Barais

In modern software development, Python third-party libraries play a critical role, especially in fields like deep learning and scientific computing. However, API parameters in these libraries often change during evolution, leading to…

Software Engineering · Computer Science 2025-12-24 Shuai Zhang , Guanping Xiao , Jun Wang , Huashan Lei , Gangqiang He , Yepang Liu , Zheng Zheng

Pyrit is a field simulation software based on the finite element method written in Python to solve coupled systems of partial differential equations. It is designed as a modular software that is easily modifiable and extendable. The…

Computational Engineering, Finance, and Science · Computer Science 2023-10-02 Jonas Bundschuh , M. Greta Ruppert , Yvonne Späck-Leigsnering

In this paper, we propose a novel end-to-end approach for AI-assisted code completion called Pythia. It generates ranked lists of method and API recommendations which can be used by software developers at edit time. The system is currently…

Software Engineering · Computer Science 2019-12-03 Alexey Svyatkovskiy , Ying Zhao , Shengyu Fu , Neel Sundaresan

Code sharing and reuse is a widespread use practice in software engineering. Although a vast amount of open-source Python code is accessible on many online platforms, programmers often find it difficult to restore a successful runtime…

Software Engineering · Computer Science 2022-01-19 Wei Cheng , Xiangrong Zhu , Wei Hu

Btrim is a fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines. It also can reliably identify barcodes and assign the reads to the original samples.…

Genomics · Quantitative Biology 2024-05-28 Yong Kong