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Disentangling model activations into meaningful features is a central problem in interpretability. However, the absence of ground-truth for these features in realistic scenarios makes validating recent approaches, such as sparse dictionary…

Machine Learning · Computer Science 2024-05-21 Aleksandar Makelov , George Lange , Neel Nanda

Interpretability is essential for user trust in real-world anomaly detection applications. However, deep learning models, despite their strong performance, often lack transparency. In this work, we study the interpretability of…

Sparse autoencoders (SAEs) interpret neural network representations by decomposing activations into sparse combinations of dictionary atoms. However, SAEs assume features combine additively through linear reconstruction, an assumption that…

Machine Learning · Computer Science 2026-05-26 Panagiotis Koromilas , Andreas D. Demou , James Oldfield , Yannis Panagakis , Mihalis Nicolaou

RFdiffusion is a popular and well-established model for generation of protein structures. However, this generative process offers limited insight into its internal representations and how they contribute to the final protein structure.…

Quantitative Methods · Quantitative Biology 2025-12-01 Wojciech Zarzecki , Paulina Szymczak , Ewa Szczurek , Kamil Deja

Object counting typically uses 2D point annotations. The complexity of object shapes and the subjectivity of annotators may lead to annotation inconsistency, potentially confusing counting model training. Some sophisticated noise-resistance…

Computer Vision and Pattern Recognition · Computer Science 2024-03-15 Yuda Zou , Xin Xiao , Peilin Zhou , Zhichao Sun , Bo Du , Yongchao Xu

Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labeled sequence-function data are…

Machine Learning · Computer Science 2025-08-27 Darin Tsui , Kunal Talreja , Amirali Aghazadeh

The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders…

Machine Learning · Computer Science 2025-02-18 Zirui He , Haiyan Zhao , Yiran Qiao , Fan Yang , Ali Payani , Jing Ma , Mengnan Du

Sparse autoencoders (SAEs) have been widely used for interpretability of neural networks, but their learned features often vary across seeds and hyperparameter settings. We introduce Ordered Sparse Autoencoders (OSAE), which extend…

Machine Learning · Computer Science 2025-12-03 Sophie L. Wang , Alex Quach , Nithin Parsan , John J. Yang

Recently there has been an increased interest in unsupervised learning of disentangled representations using the Variational Autoencoder (VAE) framework. Most of the existing work has focused largely on modifying the variational cost…

Machine Learning · Statistics 2019-09-12 Jan Stühmer , Richard E. Turner , Sebastian Nowozin

Audio autoencoders learn useful, compressed audio representations, but their non-linear latent spaces prevent intuitive algebraic manipulation such as mixing or scaling. We introduce a simple training methodology to induce linearity in a…

Sound · Computer Science 2026-01-29 Bernardo Torres , Manuel Moussallam , Gabriel Meseguer-Brocal

Software vulnerabilities such as buffer overflows and SQL injections are a major source of security breaches. Traditional methods for vulnerability detection remain essential but are limited by high false positive rates, scalability issues,…

Software Engineering · Computer Science 2026-04-10 Rui Melo , Claudia Mamede , Andre Catarino , Rui Abreu , Henrique Lopes Cardoso

Sparse autoencoders (SAEs) are an unsupervised method for learning a sparse decomposition of a neural network's latent representations into seemingly interpretable features. Despite recent excitement about their potential, research…

Motivated by the hypothesis that neural network representations encode abstract, interpretable features as linearly accessible, approximately orthogonal directions, sparse autoencoders (SAEs) have become a popular tool in interpretability.…

Machine Learning · Computer Science 2025-11-05 Valérie Costa , Thomas Fel , Ekdeep Singh Lubana , Bahareh Tolooshams , Demba Ba

Recently, a generative variational autoencoder (VAE) has been proposed for speech enhancement to model speech statistics. However, this approach only uses clean speech in the training phase, making the estimation particularly sensitive to…

Audio and Speech Processing · Electrical Eng. & Systems 2021-05-18 Huajian Fang , Guillaume Carbajal , Stefan Wermter , Timo Gerkmann

Recently, sparse autoencoders (SAEs) have emerged as a promising technique for interpreting activations in foundation models by disentangling features into a sparse set of concepts. However, identifying the optimal level of sparsity for…

Machine Learning · Computer Science 2026-04-17 Dongsheng Wang , Jinsen Zhang , Dawei Su , Hui Huang

Recent speech modeling relies on explicit attributes such as pitch, content, and speaker identity, but these alone cannot capture the full richness of natural speech. We introduce RT-MAE, a novel masked autoencoder framework that augments…

Sound · Computer Science 2026-01-28 Samir Sadok , Stéphane Lathuilière , Xavier Alameda-Pineda

A key challenge in interpretability is to decompose model activations into meaningful features. Sparse autoencoders (SAEs) have emerged as a promising tool for this task. However, a central problem in evaluating the quality of SAEs is the…

Machine Learning · Computer Science 2024-10-11 Constantin Venhoff , Anisoara Calinescu , Philip Torr , Christian Schroeder de Witt

Several recent results in machine learning have established formal connections between autoencoders---artificial neural network models that attempt to reproduce their inputs---and other coding models like sparse coding and K-means. This…

Machine Learning · Computer Science 2013-01-22 Leif Johnson , Craig Corcoran

We introduce sparse autoencoder neural operators (SAE-NOs), a new class of sparse autoencoders that operate in function spaces rather than fixed-dimensional Euclidean representations. We formalize the functional representation hypothesis,…

Machine Learning · Computer Science 2026-05-11 Bahareh Tolooshams , Ailsa Shen , Anima Anandkumar

While unsupervised variational autoencoders (VAE) have become a powerful tool in neuroimage analysis, their application to supervised learning is under-explored. We aim to close this gap by proposing a unified probabilistic model for…

Machine Learning · Computer Science 2019-07-15 Qingyu Zhao , Ehsan Adeli , Nicolas Honnorat , Tuo Leng , Kilian M. Pohl
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