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Understanding the dynamics of neural network parameters during training is one of the key challenges in building a theoretical foundation for deep learning. A central obstacle is that the motion of a network in high-dimensional parameter…

Machine Learning · Computer Science 2021-03-30 Daniel Kunin , Javier Sagastuy-Brena , Surya Ganguli , Daniel L. K. Yamins , Hidenori Tanaka

Recent works have shown that physics-inspired architectures allow the training of deep graph neural networks (GNNs) without oversmoothing. The role of these physics is unclear, however, with successful examples of both reversible (e.g.,…

Machine Learning · Computer Science 2023-12-22 Anthony Gruber , Kookjin Lee , Nathaniel Trask

This paper introduces the Neural Differential Manifold (NDM), a novel neural network architecture that explicitly incorporates geometric structure into its fundamental design. Departing from conventional Euclidean parameter spaces, the NDM…

Machine Learning · Computer Science 2025-10-30 Di Zhang

In this paper, training a neural network is identified, exactly, as a search through Hamilton--Jacobi initial-value problems: each gradient step selects the initial data of a viscous Hamilton--Jacobi equation whose Hopf--Cole propagator…

Machine Learning · Computer Science 2026-05-29 Jose Marie Antonio Miñoza , Erika Fille T. Legara , Christopher P. Monterola

Artificial Recurrent Neural Networks (RNNs) are widely used in neuroscience to model the collective activity of neurons during behavioral tasks. The high dimensionality of their parameter and activity spaces, however, often make it…

Dynamical Systems · Mathematics 2025-10-16 Alice Marraffa , Renate Krause , Valerio Mante , George Haller

Graph neural networks (GNNs) have emerged as powerful tools for learning protein structures by capturing spatial relationships at the residue level. However, existing GNN-based methods often face challenges in learning multiscale…

Machine Learning · Computer Science 2026-02-03 Shih-Hsin Wang , Yuhao Huang , Taos Transue , Justin Baker , Jonathan Forstater , Thomas Strohmer , Bao Wang

Geometric Graph Neural Networks (GNNs) and Transformers have become state-of-the-art for learning from 3D protein structures. However, their reliance on message passing prevents them from capturing the hierarchical interactions that govern…

Machine Learning · Computer Science 2025-12-09 Chang Liu , Vivian Li , Linus Leong , Vladimir Radenkovic , Pietro Liò , Chaitanya K. Joshi

We introduce the Reduced-Rank Hidden Markov Model (RR-HMM), a generalization of HMMs that can model smooth state evolution as in Linear Dynamical Systems (LDSs) as well as non-log-concave predictive distributions as in…

Machine Learning · Computer Science 2009-12-23 Sajid M. Siddiqi , Byron Boots , Geoffrey J. Gordon

We present a data-driven dimensionality reduction method that is well-suited for physics-based data representing hyperbolic wave propagation. The method utilizes a specialized neural network architecture called low rank neural…

Machine Learning · Computer Science 2025-11-05 Woojin Cho , Kookjin Lee , Noseong Park , Donsub Rim , Gerrit Welper

Hamiltonian dynamics describe a wide range of physical systems. As such, data-driven simulations of Hamiltonian systems are important for many scientific and engineering problems. In this work, we propose kernel-based methods for…

Numerical Analysis · Mathematics 2025-09-23 Yasamin Jalalian , Mostafa Samir , Boumediene Hamzi , Peyman Tavallali , Houman Owhadi

In this work, we introduce a hypergraph representation learning framework called Hypergraph Neural Networks (HNN) that jointly learns hyperedge embeddings along with a set of hyperedge-dependent embeddings for each node in the hypergraph.…

Machine Learning · Computer Science 2023-01-02 Ryan Aponte , Ryan A. Rossi , Shunan Guo , Jane Hoffswell , Nedim Lipka , Chang Xiao , Gromit Chan , Eunyee Koh , Nesreen Ahmed

Random Boolean networks (RBNs) are frequently employed for modelling complex systems driven by information processing, e.g. for gene regulatory networks (GRNs). Here we propose a hierarchical adaptive RBN (HARBN) as a system consisting of…

Physics and Society · Physics 2016-03-23 Piotr J. Gorski , Agnieszka Czaplicka , Janusz A. Holyst

We introduce the Hierarchically Interacting Particle Neural Network (HIP-NN) to model molecular properties from datasets of quantum calculations. Inspired by a many-body expansion, HIP-NN decomposes properties, such as energy, as a sum over…

Machine Learning · Statistics 2018-04-04 Nicholas Lubbers , Justin S. Smith , Kipton Barros

The current paper presents a novel recurrent neural network model, the predictive multiple spatio-temporal scales RNN (P-MSTRNN), which can generate as well as recognize dynamic visual patterns in the predictive coding framework. The model…

Computer Vision and Pattern Recognition · Computer Science 2017-03-20 Minkyu Choi , Jun Tani

We propose a learning framework to find the representation of a robot's kinematic structure and motion embedding spaces using graph neural networks (GNN). Finding a compact and low-dimensional embedding space for complex phenomena is a key…

Robotics · Computer Science 2023-02-01 J. Taery Kim , Jeongeun Park , Sungjoon Choi , Sehoon Ha

We present Higher-Order Tensor RNN (HOT-RNN), a novel family of neural sequence architectures for multivariate forecasting in environments with nonlinear dynamics. Long-term forecasting in such systems is highly challenging, since there…

Machine Learning · Computer Science 2019-08-27 Rose Yu , Stephan Zheng , Anima Anandkumar , Yisong Yue

We present GRL-SNAM, a geometric reinforcement learning framework for Simultaneous Navigation and Mapping(SNAM) in unknown environments. A SNAM problem is challenging as it needs to design hierarchical or joint policies of multiple agents…

Machine Learning · Computer Science 2026-01-05 Aditya Sai Ellendula , Yi Wang , Minh Nguyen , Chandrajit Bajaj

In this work we combine two distinct machine learning methodologies, sequential Monte Carlo and Bayesian experimental design, and apply them to the problem of inferring the dynamical parameters of a quantum system. We design the algorithm…

Quantum Physics · Physics 2012-10-10 Christopher E. Granade , Christopher Ferrie , Nathan Wiebe , D. G. Cory

Measurement data is often sampled irregularly, i.e., not on equidistant time grids. This is also true for Hamiltonian systems. However, existing machine learning methods, which learn symplectic integrators, such as SympNets [1] and…

Machine Learning · Computer Science 2025-09-25 Konrad Janik , Peter Benner

The interpretation of deep learning as a dynamical system has gained a considerable attention in recent years as it provides a promising framework. It allows for the use of existing ideas from established fields of mathematics for studying…

Optimization and Control · Mathematics 2021-06-09 Nader Ganaba