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Predicting the ground-state 3D molecular conformations from 2D molecular graphs is critical in computational chemistry due to its profound impact on molecular properties. Deep learning (DL) approaches have recently emerged as promising…

Chemical Physics · Physics 2024-10-22 Taewon Kim , Hyunjin Seo , Sungsoo Ahn , Eunho Yang

Lifelong learning (LL) aims to continuously acquire new knowledge while retaining previously learned knowledge. A central challenge in LL is the stability-plasticity dilemma, which requires models to balance the preservation of previous…

Machine Learning · Computer Science 2025-03-11 Ruiyu Wang , Sen Wang , Xinxin Zuo , Qiang Sun

Universal Machine Learning Interactomic Potentials (MLIPs) enable accelerated simulations for materials discovery. However, current research efforts fail to impactfully utilize MLIPs due to: 1. Overreliance on Density Functional Theory…

Materials Science · Physics 2025-02-07 Santiago Miret , Kin Long Kelvin Lee , Carmelo Gonzales , Sajid Mannan , N. M. Anoop Krishnan

With the increasing deployment of deep neural networks (DNNs) in terrestrial and aerospace safety-critical applications, system reliability has emerged as a co-equal design metric alongside computational efficiency. Algorithm-based fault…

Cryptography and Security · Computer Science 2025-04-22 Xinghua Xue , Cheng Liu , Feng Min , Tao Luo , Yinhe Han

Artificial neural network (ANN) potentials enable highly accurate atomistic simulations of complex materials at unprecedented scales. Despite their promise, training ANN potentials to represent intricate potential energy surfaces (PES) with…

Disordered Systems and Neural Networks · Physics 2025-11-11 In Won Yeu , Annika Stuke , Jon L. pez-Zorrilla , James M. Stevenson , David R. Reichman , Richard A. Friesner , Alexander Urban , Nongnuch Artrith

Neural network potentials are a powerful tool for atomistic simulations, allowing to accurately reproduce \textit{ab initio} potential energy surfaces with computational performance approaching classical force fields. A central component of…

Disordered Systems and Neural Networks · Physics 2023-12-27 Johannes Sandberg , Thomas Voigtmann , Emilie Devijver , Noel Jakse

Parameter-Efficient Fine-Tuning (PEFT) method has emerged as a dominant paradigm for adapting pre-trained GNN models to downstream tasks. However, existing PEFT methods usually exhibit significant vulnerability to various noise and attacks…

Machine Learning · Computer Science 2026-01-05 Ziyan Zhang , Bo Jiang , Jin Tang

The power of foundation models (FMs) lies in their capacity to learn highly expressive representations that can be adapted to a broad spectrum of tasks. However, these pretrained models require additional training stages to become effective…

Machine Learning · Computer Science 2025-10-24 Jacob L. Block , Sundararajan Srinivasan , Liam Collins , Aryan Mokhtari , Sanjay Shakkottai

Machine learning assisted optimal power flow (OPF) aims to reduce the computational complexity of these non-linear and non-convex constrained optimization problems by consigning expensive (online) optimization to offline training. The…

Machine Learning · Computer Science 2022-04-28 Thomas Falconer , Letif Mones

Recently MLP-based methods have shown strong performance in point cloud analysis. Simple MLP architectures are able to learn geometric features in local point groups yet fail to model long-range dependencies directly. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2023-12-21 Xingyilang Yin , Xi Yang , Liangchen Liu , Nannan Wang , Xinbo Gao

In the past two decades, machine learning potentials (MLP) have reached a level of maturity that now enables applications to large-scale atomistic simulations of a wide range of systems in chemistry, physics and materials science. Different…

Chemical Physics · Physics 2021-07-09 Emir Kocer , Tsz Wai Ko , Jörg Behler

Graph classification aims to extract accurate information from graph-structured data for classification and is becoming more and more important in graph learning community. Although Graph Neural Networks (GNNs) have been successfully…

Machine Learning · Computer Science 2020-06-24 Ning Ma , Jiajun Bu , Jieyu Yang , Zhen Zhang , Chengwei Yao , Zhi Yu , Sheng Zhou , Xifeng Yan

Parameter-Efficient Fine-Tuning (PEFT) is a technique that allows us to adapt powerful Foundation Models (FMs) to diverse downstream tasks while preserving and unleashing their inherent capabilities. However, we have observed that existing…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Xiaoxing Hu , Ziyang Gong , Yupei Wang , Yuru Jia , Fei Lin , Dexiang Gao , Ke An , Jianhong Han , Zhuoran Sun , Gen Luo , Gen Luo , Xue Yang

Parameter-Efficient Fine-tuning (PEFT) facilitates the fine-tuning of Large Language Models (LLMs) under limited resources. However, the fine-tuning performance with PEFT on complex, knowledge-intensive tasks is limited due to the…

Computation and Language · Computer Science 2024-06-10 Jitai Hao , WeiWei Sun , Xin Xin , Qi Meng , Zhumin Chen , Pengjie Ren , Zhaochun Ren

Deep neural networks have excelled on a wide range of problems, from vision to language and game playing. Neural networks very gradually incorporate information into weights as they process data, requiring very low learning rates. If the…

The lack of long-range electrostatics is a key limitation of modern machine learning interatomic potentials (MLIPs), hindering reliable applications to interfaces, charge-transfer reactions, polar and ionic materials, and biomolecules. In…

Computational Physics · Physics 2025-12-23 Dongjin Kim , Bingqing Cheng

Adversarial training (AT) with projected gradient descent is the most popular method to improve model robustness under adversarial attacks. However, computational overheads become prohibitively large when AT is applied to large backbone…

Machine Learning · Computer Science 2025-08-26 Quanwei Wu , Jun Guo , Wei Wang , Yi Wang

Matrix completion is a classic problem underlying recommender systems. It is traditionally tackled with matrix factorization. Recently, deep learning based methods, especially graph neural networks, have made impressive progress on this…

Information Retrieval · Computer Science 2021-03-01 Tieyun Qian , Yile Liang , Qing Li

Scene Graph Generation (SGG) endeavors to predict the relationships between subjects and objects in a given image. Nevertheless, the long-tail distribution of relations often leads to biased prediction on coarse labels, presenting a…

Computer Vision and Pattern Recognition · Computer Science 2024-11-27 Qishen Chen , Jianzhi Liu , Xinyu Lyu , Lianli Gao , Heng Tao Shen , Jingkuan Song

Atom-probe tomography (APT) facilitates nano- and atomic-scale characterization and analysis of microstructural features. Specifically, APT is well suited to study the interfacial properties of granular or heterophase systems.…

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