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In genome-scale constraint-based metabolic models, gene deletion strategies are essential for achieving growth-coupled production, where cell growth and target metabolite synthesis occur simultaneously. Despite the inherently networked…

Quantitative Methods · Quantitative Biology 2026-04-10 Ziwei Yang , Takeyuki Tamura

Revealing the hidden patterns shaping the urban environment is essential to understand its dynamics and to make cities smarter. Recent studies have demonstrated that learning the representations of urban regions can be an effective strategy…

Machine Learning · Computer Science 2022-02-21 Namwoo Kim , Yoonjin Yoon

Graph neural networks (GNNs) have been broadly studied on dynamic graphs for their representation learning, majority of which focus on graphs with homogeneous structures in the spatial domain. However, many real-world graphs - i.e.,…

Machine Learning · Computer Science 2021-10-27 Yujie Fan , Mingxuan Ju , Chuxu Zhang , Liang Zhao , Yanfang Ye

Recently, Graph Convolutional Networks (GCNs) have been widely studied for graph-structured data representation and learning. However, in many real applications, data are coming with multiple graphs, and it is non-trivial to adapt GCNs to…

Computer Vision and Pattern Recognition · Computer Science 2019-01-23 Bo Jiang , Ziyan Zhang , Jin Tang , Bin Luo

Multi-modal entity alignment aims to identify equivalent entities between two multi-modal Knowledge graphs by integrating multi-modal data, such as images and text, to enrich the semantic representations of entities. However, existing…

Artificial Intelligence · Computer Science 2026-01-21 Zhifei Li , Ziyue Qin , Xiangyu Luo , Xiaoju Hou , Yue Zhao , Miao Zhang , Zhifang Huang , Kui Xiao , Bing Yang

Graph Neural Networks (GNNs) typically scale with the number of graph edges, making them well suited for sparse graphs but less efficient on dense graphs, such as point clouds or molecular interactions. A common remedy is to sparsify the…

Machine Learning · Computer Science 2025-12-03 Shiyu Chen , Ningyuan Huang , Soledad Villar

Modeling multivariate time series has long been a subject that has attracted researchers from a diverse range of fields including economics, finance, and traffic. A basic assumption behind multivariate time series forecasting is that its…

Machine Learning · Computer Science 2020-05-26 Zonghan Wu , Shirui Pan , Guodong Long , Jing Jiang , Xiaojun Chang , Chengqi Zhang

Graph Neural Networks (GNNs) have been widely applied to various fields due to their powerful representations of graph-structured data. Despite the success of GNNs, most existing GNNs are designed to learn node representations on the fixed…

Machine Learning · Computer Science 2021-06-14 Seongjun Yun , Minbyul Jeong , Sungdong Yoo , Seunghun Lee , Sean S. Yi , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

Learning joint embedding space for various modalities is of vital importance for multimodal fusion. Mainstream modality fusion approaches fail to achieve this goal, leaving a modality gap which heavily affects cross-modal fusion. In this…

Computer Vision and Pattern Recognition · Computer Science 2020-12-11 Sijie Mai , Haifeng Hu , Songlong Xing

Data collected by different modalities can provide a wealth of complementary information, such as hyperspectral image (HSI) to offer rich spectral-spatial properties, synthetic aperture radar (SAR) to provide structural information about…

Computer Vision and Pattern Recognition · Computer Science 2026-05-05 Jiaqi Yang , Bo Du , Rong Liu , Zhu Mao , Liangpei Zhang

Fine-grained economic mapping through urban representation learning has emerged as a crucial tool for evidence-based economic decisions. While existing methods primarily rely on supervised or unsupervised approaches, they often overlook…

Machine Learning · Computer Science 2025-05-20 Jinzhou Cao , Xiangxu Wang , Jiashi Chen , Wei Tu , Zhenhui Li , Xindong Yang , Tianhong Zhao , Qingquan Li

Multi-view subspace clustering (MSC) is a popular unsupervised method by integrating heterogeneous information to reveal the intrinsic clustering structure hidden across views. Usually, MSC methods use graphs (or affinity matrices) fusion…

Machine Learning · Computer Science 2023-08-15 Yidi Wang , Xiaobing Pei , Haoxi Zhan

Though graph representation learning (GRL) has made significant progress, it is still a challenge to extract and embed the rich topological structure and feature information in an adequate way. Most existing methods focus on local structure…

Machine Learning · Computer Science 2022-12-09 Ruiyi Fang , Liangjian Wen , Zhao Kang , Jianzhuang Liu

Time-evolving traffic flow forecasting are playing a vital role in intelligent transportation systems and smart cities. However, the dynamic traffic flow forecasting is a highly nonlinear problem with complex temporal-spatial dependencies.…

Machine Learning · Computer Science 2025-08-05 Zhenan Lin , Yuni Lai , Wai Lun Lo , Richard Tai-Chiu Hsung , Harris Sik-Ho Tsang , Xiaoyu Xue , Kai Zhou , Yulin Zhu

Graph classification is an important learning task for graph-structured data. Graph neural networks (GNNs) have recently gained growing attention in graph learning and have shown significant improvements in many important graph problems.…

Machine Learning · Computer Science 2024-01-31 Tao Wen , Elynn Chen , Yuzhou Chen

Graph representation learning is of paramount importance for a variety of graph analytical tasks, ranging from node classification to community detection. Recently, graph convolutional networks (GCNs) have been successfully applied for…

Machine Learning · Computer Science 2020-11-10 Fenyu Hu , Yanqiao Zhu , Shu Wu , Weiran Huang , Liang Wang , Tieniu Tan

Heterogeneous graph neural networks (HeteGNNs) have demonstrated strong abilities to learn node representations by effectively extracting complex structural and semantic information in heterogeneous graphs. Most of the prevailing HeteGNNs…

Machine Learning · Computer Science 2025-05-08 Hong Jin , Kaicheng Zhou , Jie Yin , Lan You , Zhifeng Zhou

Metric graphs are useful tools for describing spatial domains like road and river networks, where spatial dependence act along the network. We take advantage of recent developments for such Gaussian Random Fields (GRFs), and consider joint…

Multimodal-attributed graphs (MAGs) are a fundamental data structure for multimodal graph learning (MGL), enabling both graph-centric and modality-centric tasks. However, our empirical analysis reveals inherent topology quality limitations…

Machine Learning · Computer Science 2026-03-31 Yinlin Zhu , Xunkai Li , Di Wu , Wang Luo , Miao Hu , Di Wu

Traffic forecasting is a fundamental problem in intelligent transportation systems. Existing traffic predictors are limited by their expressive power to model the complex spatial-temporal dependencies in traffic data, mainly due to the…

Machine Learning · Computer Science 2023-08-29 Adnan Zeb , Yongchao Ye , Shiyao Zhang , James J. Q. Yu
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