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Drug target interaction (DTI) prediction is a cornerstone of computational drug discovery, enabling rational design, repurposing, and mechanistic insights. While deep learning has advanced DTI modeling, existing approaches primarily rely on…

Machine Learning · Computer Science 2025-11-05 Feng Jiang , Amina Mollaysa , Hehuan Ma , Tommaso Mansi , Junzhou Huang , Mangal Prakash , Rui Liao

It is known that sparsity can improve interpretability for deep neural networks. However, existing methods in the area either require networks that are pre-trained with sparsity constraints, or impose sparsity after the fact, altering the…

Machine Learning · Computer Science 2024-07-22 Arshia Soltani Moakhar , Eugenia Iofinova , Elias Frantar , Dan Alistarh

Equation discovery is a fundamental learning task for uncovering the underlying dynamics of complex systems, with wide-ranging applications in areas such as brain connectivity analysis, climate modeling, gene regulation, and physical…

Machine Learning · Computer Science 2026-01-29 Jiaqiang Li , Jianbin Tan , Xueqin Wang

The growing environmental footprint of artificial intelligence (AI), especially in terms of storage and computation, calls for more frugal and interpretable models. Sparse models (e.g., linear, neural networks) offer a promising solution by…

Machine Learning · Statistics 2025-09-23 Sylvain Sardy , Maxime van Cutsem , Xiaoyu Ma

Large language models (LLMs) have achieved remarkable performance across many tasks, yet aligning them with desired behaviors remains challenging. Activation intervention has emerged as an effective and economical method to modify the…

Computation and Language · Computer Science 2025-02-26 Weixuan Wang , Jingyuan Yang , Wei Peng

In computer vision, depth estimation is crucial for domains like robotics, autonomous vehicles, augmented reality, and virtual reality. Integrating semantics with depth enhances scene understanding through reciprocal information sharing.…

Computer Vision and Pattern Recognition · Computer Science 2023-08-29 Md Awsafur Rahman , Shaikh Anowarul Fattah

The sparse identification of nonlinear dynamics (SINDy) has been established as an effective technique to produce interpretable models of dynamical systems from time-resolved state data via sparse regression. However, to model parameterized…

Dynamical Systems · Mathematics 2024-05-15 Javier A. Lemus , Benjamin Herrmann

Survival analysis is a fundamental tool for modeling time-to-event outcomes in healthcare. Recent advances have introduced flexible neural network approaches for improved predictive performance. However, most of these models do not provide…

Machine Learning · Statistics 2025-09-10 Mert Ketenci , Vincent Jeanselme , Harry Reyes Nieva , Shalmali Joshi , Noémie Elhadad

Factorization Machine (FM) is a widely used supervised learning approach by effectively modeling of feature interactions. Despite the successful application of FM and its many deep learning variants, treating every feature interaction…

Machine Learning · Computer Science 2019-02-28 Fuxing Hong , Dongbo Huang , Ge Chen

Deep learning-based drug-target interaction (DTI) prediction methods have demonstrated strong performance; however, real-world applicability remains constrained by limited data diversity and modeling complexity. To address these challenges,…

Feature selection is a critical component in predictive analytics that significantly affects the prediction accuracy and interpretability of models. Intrinsic methods for feature selection are built directly into model learning, providing a…

Machine Learning · Computer Science 2024-03-19 Theodor Stoecker , Nico Hambauer , Patrick Zschech , Mathias Kraus

Background: Drug-drug interactions (DDIs) refer to processes triggered by the administration of two or more drugs leading to side effects beyond those observed when drugs are administered by themselves. Due to the massive number of possible…

Quantitative Methods · Quantitative Biology 2020-12-25 Kyriakos Schwarz , Ahmed Allam , Nicolas Andres Perez Gonzalez , Michael Krauthammer

Many applications of machine learning involve the analysis of large data frames-matrices collecting heterogeneous measurements (binary, numerical, counts, etc.) across samples-with missing values. Low-rank models, as studied by Udell et al.…

Machine Learning · Statistics 2018-12-21 Geneviève Robin , Hoi-To Wai , Julie Josse , Olga Klopp , Éric Moulines

Interactions between modalities -- redundancy, uniqueness, and synergy -- collectively determine the composition of multimodal information. Understanding these interactions is crucial for analyzing information dynamics in multimodal…

Machine Learning · Computer Science 2025-06-24 Zequn Yang , Hongfa Wang , Di Hu

In this paper, we design novel interactive deep learning methods to improve semantic interactions in visual analytics applications. The ability of semantic interaction to infer analysts' precise intents during sensemaking is dependent on…

Machine Learning · Computer Science 2023-05-31 Yali Bian , Chris North

Recovering latent structure from count data has received considerable attention in network inference, particularly when one seeks both cross-group interactions and within-group similarity patterns in bipartite networks, which is widely used…

Machine Learning · Statistics 2026-04-27 Aoran Zhang , Tianyao Wei , Maria J. Guerrero , César A. Uribe

Automation of tasks can have critical consequences when humans lose agency over decision processes. Deep learning models are particularly susceptible since current black-box approaches lack explainable reasoning. We argue that both the…

Human-Computer Interaction · Computer Science 2019-07-26 Sebastian Gehrmann , Hendrik Strobelt , Robert Krüger , Hanspeter Pfister , Alexander M. Rush

Calculation of near-neighbor interactions among high dimensional, irregularly distributed data points is a fundamental task to many graph-based or kernel-based machine learning algorithms and applications. Such calculations, involving…

As the availability and importance of temporal interaction data--such as email communication--increases, it becomes increasingly important to understand the underlying structure that underpins these interactions. Often these interactions…

Machine Learning · Computer Science 2020-06-16 Elahe Ghalebi , Hamidreza Mahyar , Radu Grosu , Graham W. Taylor , Sinead A. Williamson

We consider online change detection of high dimensional data streams with sparse changes, where only a subset of data streams can be observed at each sensing time point due to limited sensing capacities. On the one hand, the detection…

Machine Learning · Statistics 2020-09-23 Jie Guo , Hao Yan , Chen Zhang , Steven Hoi