Related papers: Computing k-mers in Graphs
In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these index structures far more complex than a single string, as was originally done with the FM-index…
Let $G$ be a connected graph. For an ordered set $S=\{v_1,\ldots, v_\ell\}\subseteq V(G)$, the vector $r_G(v|S) = (d_G(v_1,v), \ldots, d_G(v_\ell,v))$ is called the metric $S$-representation of $v$. If for any pair of different vertices…
Tracking of moving objects is crucial to security systems and networks. Given a graph $G$, terminal vertices $s$ and $t$, and an integer $k$, the \textsc{Tracking Paths} problem asks whether there exists at most $k$ vertices, which if…
The Weisfeiler-Leman dimension of a graph $G$ is the least number $k$ such that the $k$-dimensional Weisfeiler-Leman algorithm distinguishes $G$ from every other non-isomorphic graph. The dimension is a standard measure of the descriptive…
Given a graph $G = (V,E)$, a set $S \subset V$ is called a $k$-\emph{metric generator} for $G$ if any pair of different vertices of $G$ is distinguished by at least $k$ elements of $S$. A graph is $k$-\emph{metric dimensional} if $k$ is the…
Given a positive integer $k$, a $k$-dominating set in a graph $G$ is a set of vertices such that every vertex not in the set has at least $k$ neighbors in the set. A total $k$-dominating set, also known as a $k$-tuple total dominating set,…
We consider the problem of counting matchings in planar graphs. While perfect matchings in planar graphs can be counted by a classical polynomial-time algorithm, the problem of counting all matchings (possibly containing unmatched vertices,…
A vertex k-labeling of graph G is distinguishing if the only automorphism that preserves the labels of G is the identity map. The distinguishing number of G, D(G), is the smallest integer k for which G has a distinguishing k-labeling. In…
Motivated by the increasing need for fast processing of large-scale graphs, we study a number of fundamental graph problems in a message-passing model for distributed computing, called $k$-machine model, where we have $k$ machines that…
Graph spanners are sparse subgraphs that faithfully preserve the distances in the original graph up to small stretch. Spanner have been studied extensively as they have a wide range of applications ranging from distance oracles, labeling…
Seminal research in the field of graph neural networks (GNNs) has revealed a direct correspondence between the expressive capabilities of GNNs and the $k$-dimensional Weisfeiler-Leman ($k$WL) test, a widely-recognized method for verifying…
Graphlets of order $k$ in a graph $G$ are connected subgraphs induced by $k$ nodes (called $k$-graphlets) or by $k$ edges (called edge $k$-graphlets). They are among the interesting subgraphs in network analysis to get insights on both the…
In this paper we study the hardness of the $k$-Center problem on inputs that model transportation networks. For the problem, a graph $G=(V,E)$ with edge lengths and an integer $k$ are given and a center set $C\subseteq V$ needs to be chosen…
The $k$-dimensional Weisfeiler-Leman algorithm ($k$-WL) is a fruitful approach to the Graph Isomorphism problem. 2-WL corresponds to the original algorithm suggested by Weisfeiler and Leman over 50 years ago. 1-WL is the classical color…
Finding all maximal $k$-plexes on networks is a fundamental research problem in graph analysis due to many important applications, such as community detection, biological graph analysis, and so on. A $k$-plex is a subgraph in which every…
Subgraph counting is a fundamental task for analyzing structural patterns in graph-structured data, with important applications in domains such as computational biology and social network analysis, where recurring motifs reveal functional…
Given a connected graph $G=(V,E)$, a set $S\subseteq V$ is a $k$-metric generator for $G$ if for any two different vertices $u,v\in V$, there exist at least $k$ vertices $w_1,...,w_k\in S$ such that $d_G(u,w_i)\ne d_G(v,w_i)$ for every…
Given a graph $G = (V, E)$ and an integer $k$, we study $k$-Vertex Seperator (resp. $k$-Edge Separator), where the goal is to remove the minimum number of vertices (resp. edges) such that each connected component in the resulting graph has…
The Planar Graph Metric Compression Problem is to compactly encode the distances among $k$ nodes in a planar graph of size $n$. Two na\"ive solutions are to store the graph using $O(n)$ bits, or to explicitly store the distance matrix with…
In the $k$-Center problem, we are given a graph $G=(V,E)$ with positive edge weights and an integer $k$ and the goal is to select $k$ center vertices $C \subseteq V$ such that the maximum distance from any vertex to the closest center…