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A powerful existing technique for evaluating statistical mechanical quantities in two-dimensional Ising models is based on constructing a matrix representing the nearest neighbor spin couplings and then evaluating the Pfaffian of the…

Disordered Systems and Neural Networks · Physics 2013-04-16 Creighton K. Thomas , A. Alan Middleton

We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant…

Biological Physics · Physics 2009-11-06 G. Getz , E. Levine , E. Domany

Multiresolution analysis and matrix factorization are foundational tools in computer vision. In this work, we study the interface between these two distinct topics and obtain techniques to uncover hierarchical block structure in symmetric…

Computer Vision and Pattern Recognition · Computer Science 2017-05-17 Vamsi K. Ithapu , Risi Kondor , Sterling C. Johnson , Vikas Singh

Folding is emerging as a promising manufacturing process to transform flat materials into functional structures, offering efficiency by reducing the need for welding, gluing, and molding, while minimizing waste and enabling automation.…

Soft Condensed Matter · Physics 2025-10-20 João C. Neves , Bernardo R. Marques , Cristóvão S. Dias , Nuno A. M. Araújo

Topological data analysis (TDA) detects geometric structure in biological data. However, many TDA algorithms are memory intensive and impractical for massive datasets. Here, we introduce a statistical protocol that reduces TDA's memory…

Quantitative Methods · Quantitative Biology 2025-09-05 Andrew J. Stier , Naichen Shi , Raed Al Kontar , Chad Giusti , Marc G. Berman

Recurrence plot based methods are highly efficient and widely accepted tools for the investigation of time series or one-dimensional data. We present an extension of the recurrence plots and their quantifications in order to study recurrent…

Chaotic Dynamics · Physics 2007-06-13 Norbert Marwan , Juergen Kurths , Peter Saparin

In the present paper, an integrated paradigm for topology optimization on complex surfaces with arbitrary genus is proposed. The approach is constructed based on the two-dimensional (2D) Moving Morphable Component (MMC) framework, where a…

Optimization and Control · Mathematics 2022-02-03 Wendong Huo , Chang Liu , Zongliang Du , Xudong Jiang , Zhengyu Liu , Xu Guo

Processing large complex networks recently attracted considerable interest. Complex graphs are useful in a wide range of applications from technological networks to biological systems like the human brain. Sometimes these networks are…

Data Structures and Algorithms · Computer Science 2019-12-03 Christian Schulz

We propose a method to simultaneously compute scalar basis functions with an associated functional map for a given pair of triangle meshes. Unlike previous techniques that put emphasis on smoothness with respect to the Laplace--Beltrami…

Graphics · Computer Science 2019-10-01 Omri Azencot , Rongjie Lai

Owing to the advances in computational techniques and the increase in computational power, atomistic simulations of materials can simulate large systems with higher accuracy. Complex phenomena can be observed in such state-of-the-art…

Materials Science · Physics 2022-02-16 Ryo Tamura , Momo Matsuda , Jianbo Lin , Yasunori Futamura , Tetsuya Sakurai , Tsuyoshi Miyazaki

Image segmentation is a largely researched field where neural networks find vast applications in many facets of technology. Some of the most popular approaches to train segmentation networks employ loss functions optimizing pixel-overlap,…

Computer Vision and Pattern Recognition · Computer Science 2022-11-29 Nico Stucki , Johannes C. Paetzold , Suprosanna Shit , Bjoern Menze , Ulrich Bauer

In this study, we address the complex issue of graph clustering in signed graphs, which are characterized by positive and negative weighted edges representing attraction and repulsion among nodes, respectively. The primary objective is to…

Data Structures and Algorithms · Computer Science 2024-07-10 Felix Hausberger , Marcelo Fonseca Faraj , Christian Schulz

The network architecture of the human brain has become a feature of increasing interest to the neuroscientific community, largely because of its potential to illuminate human cognition, its variation over development and aging, and its…

Neurons and Cognition · Quantitative Biology 2016-11-07 Richard F. Betzel , Danielle S. Bassett

Large-scale multi-session LiDAR mapping is crucial for various applications but still faces significant challenges in data redundancy, memory consumption, and efficiency. This paper presents MS-Mapping, a novel multi-session LiDAR mapping…

Robotics · Computer Science 2024-07-18 Xiangcheng Hu , Jin Wu , Jianhao Jiao , Wei Zhang , Ping Tan

Detecting structure in data is the first step to arrive at meaningful representations for systems. This is particularly challenging for dislocation networks evolving as a consequence of plastic deformation of crystalline systems. Our study…

Materials Science · Physics 2024-06-24 Benjamin Udofia , Tushar Jogi , Markus Stricker

There is a set of rectangular macros with given dimensions, and there are wires connecting some pairs (or sets) of them. We have a placement area where these macros should be placed without overlaps in order to minimize the total length of…

Data Structures and Algorithms · Computer Science 2015-09-08 Endre Csóka , Attila Deák

Advancements in cytometry technologies have led to a remarkable increase in the number of markers that can be analyzed simultaneously, presenting significant challenges in data analysis. Traditional approaches, such as dimensional reduction…

Quantitative Methods · Quantitative Biology 2025-07-01 Masahiro Ono

As interactive web-based geovisualization becomes increasingly vital across disciplines, there is a growing need for open-source frameworks that support dynamic, multi-attribute spatial analysis and accessible design. This paper introduces…

Human-Computer Interaction · Computer Science 2025-09-10 Sarigai Sarigai , Liping Yang , Katie Slack , Carolyn Fish , Michaela Buenemann , Qiusheng Wu , Yan Lin , Joseph A. Cook , David Jacobs

In parameter estimation problems one computes a posterior distribution over uncertain parameters defined jointly by a prior distribution, a model, and noisy data. Markov Chain Monte Carlo (MCMC) is often used for the numerical solution of…

Numerical Analysis · Mathematics 2017-11-15 Matthias Morzfeld , Marcus S. Day , Ray W. Grout , George Shu Heng Pau , Stefan A. Finsterle , John B. Bell

The Mapper algorithm does not include a check for whether the cover produced conforms to the requirements of the nerve lemma. To perform a check for obstructions to the nerve lemma, statistical considerations of multiple testing quickly…

Algebraic Topology · Mathematics 2018-08-30 Mikael Vejdemo-Johansson , Alisa Leshchenko
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