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Preserving geometric structure is important in learning. We propose a unified class of geometry-aware architectures that interleave geometric updates between layers, where both projection layers and intrinsic exponential map updates arise…

Machine Learning · Computer Science 2026-02-04 Karthik Elamvazhuthi , Shiba Biswal , Kian Rosenblum , Arushi Katyal , Tianli Qu , Grady Ma , Rishi Sonthalia

We introduce RGFlow, a deep neural network-based real-space renormalization group (RG) framework tailored for continuum scalar field theories. Leveraging generative capabilities of flow-based neural networks, RGFlow autonomously learns…

Disordered Systems and Neural Networks · Physics 2026-04-29 Yueqi Zhao , Michael M. Fogler , Yi-Zhuang You

Neural architectures inspired by our own human cognitive system, such as the recently introduced world models, have been shown to outperform traditional deep reinforcement learning (RL) methods in a variety of different domains. Instead of…

Neural and Evolutionary Computing · Computer Science 2019-06-24 Sebastian Risi , Kenneth O. Stanley

Generative modeling over discrete data has recently seen numerous success stories, with applications spanning language modeling, biological sequence design, and graph-structured molecular data. The predominant generative modeling paradigm…

Machine Learning · Computer Science 2024-11-01 Oscar Davis , Samuel Kessler , Mircea Petrache , İsmail İlkan Ceylan , Michael Bronstein , Avishek Joey Bose

In the present work, we study the properties of biological networks by applying analogous notions of fundamental concepts in Riemannian geometry and optimal mass transport to discrete networks described by weighted graphs. Specifically, we…

Molecular Networks · Quantitative Biology 2017-12-11 Maryam Pouryahya , James Mathews , Allen Tannenbaum

Community detection is an important problem in graph neural networks. Recently, algorithms based on Ricci curvature flows have gained significant attention. It was suggested by Ollivier (2009), and applied to community detection by Ni et al…

Analysis of PDEs · Mathematics 2025-05-22 Jicheng Ma , Yunyan Yang

Functional brain graphs are often characterized with separate graph-theoretic or spectral descriptors, overlooking how these properties covary and partially overlap across brains and conditions. We anticipate that dense, weighted functional…

Neurons and Cognition · Quantitative Biology 2025-11-07 Subati Abulikemu , Tiago Azevedo , Michail Mamalakis , John Suckling

Recent methods in geometric deep learning have introduced various neural networks to operate over data that lie on Riemannian manifolds. Such networks are often necessary to learn well over graphs with a hierarchical structure or to learn…

Machine Learning · Statistics 2023-10-17 Isay Katsman , Eric Ming Chen , Sidhanth Holalkere , Anna Asch , Aaron Lou , Ser-Nam Lim , Christopher De Sa

Understanding how deep neural networks learn representations remains a central challenge in machine learning theory. In this work, we propose a feature-centric framework for analyzing neural network training by relating weight updates to…

Machine Learning · Computer Science 2026-05-08 Taehun Cha , Daniel Beaglehole , Adityanarayanan Radhakrishnan , Donghun Lee

In this paper, we consider the problem of approximately aligning/matching two graphs. Given two graphs $G_{1}=(V_{1},E_{1})$ and $G_{2}=(V_{2},E_{2})$, the objective is to map nodes $u, v \in G_1$ to nodes $u',v'\in G_2$ such that when $u,…

Social and Information Networks · Computer Science 2018-09-11 Chien-Chun Ni , Yu-Yao Lin , Jie Gao , Xianfeng David Gu

The rapid development of deep learning has significant implications for the advancement of Computational Fluid Dynamics (CFD). Currently, most pixel-grid-based deep learning methods for flow field prediction exhibit significantly reduced…

Fluid Dynamics · Physics 2024-04-11 Tianyu Li , Shufan Zou , Xinghua Chang , Laiping Zhang , Xiaogang Deng

Recent experiments have shown that training trajectories of multiple deep neural networks with different architectures, optimization algorithms, hyper-parameter settings, and regularization methods evolve on a remarkably low-dimensional…

Machine Learning · Computer Science 2025-11-19 Jialin Mao , Itay Griniasty , Yan Sun , Mark K. Transtrum , James P. Sethna , Pratik Chaudhari

Real-world graphs, such as social networks, financial transactions, and recommendation systems, often demonstrate dynamic behavior. This phenomenon, known as graph stream, involves the dynamic changes of nodes and the emergence and…

Machine Learning · Computer Science 2023-05-16 Yanping Zheng , Zhewei Wei , Jiajun Liu

Neural networks have been shown to have a remarkable ability to uncover low dimensional structure in data: the space of possible reconstructed images form a reduced model manifold in image space. We explore this idea directly by analyzing…

Disordered Systems and Neural Networks · Physics 2017-05-31 Lorien X. Hayden , Alexander A. Alemi , Paul H. Ginsparg , James P. Sethna

In this paper, we study the dynamics of gradient descent in learning neural networks for classification problems. Unlike in existing works, we consider the linearly non-separable case where the training data of different classes lie in…

Machine Learning · Computer Science 2020-12-11 Ziang Long , Penghang Yin , Jack Xin

Advances in experimental neuroscience have transformed our ability to explore the structure and function of neural circuits. At the same time, advances in machine learning have unleashed the remarkable computational power of artificial…

Neurons and Cognition · Quantitative Biology 2021-11-23 SueYeon Chung , L. F. Abbott

Diffusion and flow-based generative models have achieved remarkable success in domains such as image synthesis, video generation, and natural language modeling. In this work, we extend these advances to weight space learning by leveraging…

Machine Learning · Computer Science 2025-10-17 Daniel Saragih , Deyu Cao , Tejas Balaji

Recent deep learning approaches for representation learning on graphs follow a neighborhood aggregation procedure. We analyze some important properties of these models, and propose a strategy to overcome those. In particular, the range of…

Machine Learning · Computer Science 2018-06-27 Keyulu Xu , Chengtao Li , Yonglong Tian , Tomohiro Sonobe , Ken-ichi Kawarabayashi , Stefanie Jegelka

Deep learning algorithms demonstrate a surprising ability to learn high-dimensional tasks from limited examples. This is commonly attributed to the depth of neural networks, enabling them to build a hierarchy of abstract, low-dimensional…

Machine Learning · Computer Science 2024-07-04 Francesco Cagnetta , Leonardo Petrini , Umberto M. Tomasini , Alessandro Favero , Matthieu Wyart

Task-based modeling with recurrent neural networks (RNNs) has emerged as a popular way to infer the computational function of different brain regions. These models are quantitatively assessed by comparing the low-dimensional neural…

Neurons and Cognition · Quantitative Biology 2019-12-06 Niru Maheswaranathan , Alex H. Williams , Matthew D. Golub , Surya Ganguli , David Sussillo