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Objective: to provide a scoping review of papers on clinical natural language processing (NLP) tasks that use publicly available electronic health record data from a cohort of patients. Materials and Methods: We searched six databases,…

Research in the food domain is at times limited due to data sharing obstacles, such as data ownership, privacy requirements, and regulations. While important, these obstacles can restrict data-driven methods such as machine learning.…

Machine Learning · Computer Science 2025-08-12 Zuzanna Fendor , Bas H. M. van der Velden , Xinxin Wang , Andrea Jr. Carnoli , Osman Mutlu , Ali Hürriyetoğlu

As Open Access continues to gain importance in science policy, understanding the proportion of Open Access publications relative to the total research output of research-performing organizations, individual countries, or even globally has…

Digital Libraries · Computer Science 2026-05-08 Johannes Schneider , Heinz Pampel

Open datasets play a crucial role in three research domains that intersect data science and education: learning analytics, educational data mining, and artificial intelligence in education. Researchers in these domains apply computational…

Computers and Society · Computer Science 2026-04-14 Valdemar Švábenský , Brendan Flanagan , Erwin Daniel López Zapata , Atsushi Shimada

Introduction: Digital products increasingly reshape industries, influencing human behavior and decision-making. However, the software development teams developing these systems often lack diversity, which may lead to designs that overlook…

High-quality computational and data-intensive (CDI) applications are critical for advancing research frontiers in almost all disciplines. Despite their importance, there is a significant gap due to the lack of comprehensive best practices…

Computational Engineering, Finance, and Science · Computer Science 2024-06-05 Parinaz Barakhshan , Rudolf Eigenmann

We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-21 Derek Groen , Agastya Bhati , James Suter , James Hetherington , Stefan Zasada , Peter Coveney

As computer systems become more and more complex, software and tools lag more and more behind. This is especially true for scientific software that often demands high performance, and thus needs to take advantage of parallelisms, memory…

Computers and Society · Computer Science 2013-09-11 Anne C. Elster

Academic Search is a search task aimed to manage and retrieve scientific documents like journal articles and conference papers. Personalization in this context meets individual researchers' needs by leveraging, through user profiles, the…

Information Retrieval · Computer Science 2025-07-21 Pranav Kasela , Gabriella Pasi , Raffaele Perego

The field of medical imaging AI is currently undergoing rapid transformations, with methodical research increasingly translated into clinical practice. Despite these successes, research suffers from knowledge silos, hindering collaboration…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Patrick Godau , Akriti Srivastava , Constantin Ulrich , Tim Adler , Klaus Maier-Hein , Lena Maier-Hein

To meet the standards of the Open Science movement, the FAIR Principles emphasize the importance of making scientific data Findable, Accessible, Interoperable, and Reusable. Yet, creating a repository that adheres to these principles…

Managing Research Data, and making it available for use/reuse by others in line with the UKRI Concordat on Open Research Data and FAIR principles, is a major issue for research-intensive organisations. In this case study we outline an…

Software Engineering · Computer Science 2023-03-24 Felicity Currie , Mark Basham , Laura Shemilt , Nick Lynch

Various stakeholders, such as researchers, government agencies, businesses, and research laboratories require a large volume of reliable scientific research outcomes including research articles and patent data to support their work. These…

Databases · Computer Science 2024-10-01 Xinran Wu , Hui Zou , Yidan Xing , Jingjing Qu , Qiongxiu Li , Renxia Xue , Xiaoming Fu

Exploding data volumes and velocities, new computational methods and platforms, and ubiquitous connectivity demand new approaches to computation in the sciences. These new approaches must enable computation to be mobile, so that, for…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-12 Ryan Chard , Yadu Babuji , Zhuozhao Li , Tyler Skluzacek , Anna Woodard , Ben Blaiszik , Ian Foster , Kyle Chard

Open Science is a recurrent topic in scientific discussion, and there is a current effort to make research more accessible to a broader audience. A focus on delivering research findings that are reproducible, or even re-usable has been…

Human-Computer Interaction · Computer Science 2024-02-16 Pedro Costa Klein , Christoph Lehrenfeld , Markus Osterhoff , Martin Uecker

MaRDI Open Interfaces is a software project aimed at improving reuse and interoperability in Scientific Computing by alleviating the difficulties of crossing boundaries between different programming languages, in which numerical packages…

Mathematical Software · Computer Science 2025-11-18 Dmitry I. Kabanov , Stephan Rave , Mario Ohlberger

With the recent advances in natural language processing (NLP), a vast number of applications have emerged across various use cases. Among the plethora of NLP applications, many academic researchers are motivated to do work that has a…

Computation and Language · Computer Science 2023-10-24 Fernando Gonzalez , Zhijing Jin , Bernhard Schölkopf , Tom Hope , Mrinmaya Sachan , Rada Mihalcea

Science is facing a reproducibility crisis. Previous work has proposed incorporating data analysis replications into classrooms as a potential solution. However, despite the potential benefits, it is unclear whether this approach is…

Computers and Society · Computer Science 2024-08-01 Kristina Gligoric , Tiziano Piccardi , Jake Hofman , Robert West

The main output of the FORCE11 Software Citation working group (https://www.force11.org/group/software-citation-working-group) was a paper on software citation principles (https://doi.org/10.7717/peerj-cs.86) published in September 2016.…

Many emerging Artificial Intelligence (AI) applications require on-demand provisioning of large-scale computing, which can only be enabled by leveraging distributed computing services interconnected through networking. To address such…

Networking and Internet Architecture · Computer Science 2024-07-09 Ruikun Wang , Jiawei Zhang , Qiaolun Zhang , Bojun Zhang , Zhiqun Gu , Aryanaz Attarpour , Yuefeng Ji , Massimo Tornatore
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