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The analysis of 3D point clouds has diverse applications in robotics, vision and graphics. Processing them presents specific challenges since they are naturally sparse, can vary in spatial resolution and are typically unordered. Graph-based…

Computer Vision and Pattern Recognition · Computer Science 2023-04-03 Mohammad Khodadad , Morteza Rezanejad , Ali Shiraee Kasmaee , Kaleem Siddiqi , Dirk Walther , Hamidreza Mahyar

Convolutional neural networks (CNNs) leverage the great power in representation learning on regular grid data such as image and video. Recently, increasing attention has been paid on generalizing CNNs to graph or network data which is…

Social and Information Networks · Computer Science 2018-08-21 Yao Ma , Suhang Wang , Charu C. Aggarwal , Dawei Yin , Jiliang Tang

We present a graph neural network (GNN) based surrogate framework for molecular dynamics simulations that directly predicts atomic displacements and learns the underlying evolution operator of an atomistic system. Unlike conventional…

Materials Science · Physics 2025-12-29 Judah Immanuel , Avik Mahata , Aniruddha Maiti

Mesoscale simulations of fission gas release (FGR) in nuclear fuel provide a powerful tool for understanding how microstructure evolution impacts FGR, but they are computationally intensive. In this study, we present an alternate,…

Mesoscale and Nanoscale Physics · Physics 2023-10-31 Peter Toma , Md Ali Muntaha , Joel B. Harley , Michael R. Tonks

Learning expressive molecular representations is crucial to facilitate the accurate prediction of molecular properties. Despite the significant advancement of graph neural networks (GNNs) in molecular representation learning, they generally…

Machine Learning · Computer Science 2023-05-19 Hossein Hajiabolhassan , Zahra Taheri , Ali Hojatnia , Yavar Taheri Yeganeh

In recent years, machine learning (ML) methods have become increasingly popular in wireless communication systems for several applications. A critical bottleneck for designing ML systems for wireless communications is the availability of…

Signal Processing · Electrical Eng. & Systems 2025-06-03 Satyavrat Wagle , Akshay Malhotra , Shahab Hamidi-Rad , Aditya Sant , David J. Love , Christopher G. Brinton

Accurate prediction of network-wide traffic conditions is essential for intelligent transportation systems. In the last decade, machine learning techniques have been widely used for this task, resulting in state-of-the-art performance. We…

Machine Learning · Computer Science 2021-11-23 Lei Lin , Weizi Li , Lei Zhu

A hallmark of meso-scale interfacial fluids is the multi-faceted, scale-dependent interfacial energy, which often manifests different characteristics across the molecular and continuum scale. The multi-scale nature imposes a challenge to…

Computational Physics · Physics 2023-02-22 Pei Ge , Linfeng Zhang , Huan Lei

Graph neural networks (GNN) are very popular methods in machine learning and have been applied very successfully to the prediction of the properties of molecules and materials. First-order GNNs are well known to be incomplete, i.e., there…

Machine Learning · Statistics 2022-11-08 Sergey N. Pozdnyakov , Michele Ceriotti

Coarse-graining (CG) accelerates molecular simulations of protein dynamics by simulating sets of atoms as singular beads. Backmapping is the opposite operation of bringing lost atomistic details back from the CG representation. While…

Machine Learning · Computer Science 2023-03-06 Soojung Yang , Rafael Gómez-Bombarelli

Determining the optimal number and identity of structural clusters from an ensemble of molecular configurations continues to be a challenge. Recent structural clustering methods have focused on the use of internal coordinates due to the…

Chemical Physics · Physics 2023-01-11 Heidi Klem , Glen M. Hocky , Martin McCullagh

Machine learning (ML) has been increasingly applied in concrete research to optimize performance and mixture design. However, one major challenge in applying ML to cementitious materials is the limited size and diversity of available…

Computational Engineering, Finance, and Science · Computer Science 2025-12-18 Mahmuda Sharmin , Taihao Han , Jie Huang , Narayanan Neithalath , Gaurav Sant , Aditya Kumar

The circum-galactic medium (CGM) can feasibly be mapped by multiwavelength surveys covering broad swaths of the sky. With multiple large datasets becoming available in the near future, we develop a likelihood-free Deep Learning technique…

Agglomeration techniques can be successfully employed to reduce the computational costs of numerical simulations and stand at the basis of multilevel algebraic solvers. To automatically perform mesh agglomeration, we propose a novel…

Numerical Analysis · Mathematics 2025-08-08 Paola F. Antonietti , Mattia Corti , Gabriele Martinelli

Quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations have been developed to simulate molecular systems, where an explicit description of changes in the electronic structure is necessary. However, QM/MM MD…

Chemical Physics · Physics 2021-04-15 Lennard Böselt , Moritz Thürlemann , Sereina Riniker

Coarse-grained molecular dynamics (CGMD) is a technique developed as a concurrent multiscale model that couples conventional molecular dynamics (MD) to a more coarse-grained description of the periphery. The coarse-grained regions are…

Materials Science · Physics 2009-11-11 Robert E. Rudd , Jeremy Q. Broughton

Graph Neural Networks (GNN) can capture the geometric properties of neural representations in EEG data. Here we utilise those to study how reinforcement-based motor learning affects neural activity patterns during motor planning, leveraging…

Machine Learning · Computer Science 2024-11-01 Federico Nardi , Jinpei Han , Shlomi Haar , A. Aldo Faisal

Graph convolutional networks (GCNs) allow us to learn topologically-aware node embeddings, which can be useful for classification or link prediction. However, they are unable to capture long-range dependencies between nodes without adding…

Machine Learning · Computer Science 2023-08-17 Reza Namazi , Elahe Ghalebi , Sinead Williamson , Hamidreza Mahyar

An Obstruction Avoidance Generously Mobility (OAGM) model has been introduced for controlling ad-hoc sensor networks and thereby operating emerging fields like military and healthcare services. According to this model, the ability to send a…

Networking and Internet Architecture · Computer Science 2013-04-15 V. Vasanthi , M. Hemalatha

Memory-based Temporal Graph Neural Networks are powerful tools in dynamic graph representation learning and have demonstrated superior performance in many real-world applications. However, their node memory favors smaller batch sizes to…

Machine Learning · Computer Science 2023-07-18 Hongkuan Zhou , Da Zheng , Xiang Song , George Karypis , Viktor Prasanna