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We tackle the network topology inference problem by utilizing Laplacian constrained Gaussian graphical models, which recast the task as estimating a precision matrix in the form of a graph Laplacian. Recent research \cite{ying2020nonconvex}…

Machine Learning · Computer Science 2023-09-06 Jiaxi Ying , Xi Han , Rui Zhou , Xiwen Wang , Hing Cheung So

A main challenge in mining network-based data is finding effective ways to represent or encode graph structures so that it can be efficiently exploited by machine learning algorithms. Several methods have focused in network representation…

Social and Information Networks · Computer Science 2019-03-18 Leonardo Gutiérrez-Gómez , Jean-Charles Delvenne

Graph prediction problems prevail in data analysis and machine learning. The inverse prediction problem, namely to infer input data from given output labels, is of emerging interest in various applications. In this work, we develop…

Machine Learning · Statistics 2022-11-22 Chen Xu , Xiuyuan Cheng , Yao Xie

Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…

Computational Complexity · Computer Science 2020-06-04 Massimo Equi , Roberto Grossi , Veli Mäkinen

Subgraph matching is to find all subgraphs in a data graph that are isomorphic to an existing query graph. Subgraph matching is an NP-hard problem, yet has found its applications in many areas. Many learning-based methods have been proposed…

Discrete Mathematics · Computer Science 2022-11-09 Zixun Lan , Ye Ma , Limin Yu , LingLong Yuan , Fei Ma

Recently, there is a revival of interest in low-rank matrix completion-based unsupervised learning through the lens of dual-graph regularization, which has significantly improved the performance of multidisciplinary machine learning tasks…

Machine Learning · Computer Science 2022-09-07 Yangge Chen , Lei Cheng , Yik-Chung Wu

As one of the most fundamental tasks in graph theory, subgraph matching is a crucial task in many fields, ranging from information retrieval, computer vision, biology, chemistry and natural language processing. Yet subgraph matching problem…

Machine Learning · Computer Science 2022-09-19 Zixun Lan , Limin Yu , Linglong Yuan , Zili Wu , Qiang Niu , Fei Ma

Graph pattern matching is a routine process for a wide variety of applications such as social network analysis. It is typically defined in terms of subgraph isomorphism which is NP-Complete. To lower its complexity, many extensions of graph…

Databases · Computer Science 2018-04-13 Houari Mahfoud

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

We propose a novel benchmarking methodology for graph neural networks (GNNs) based on the graph alignment problem, a combinatorial optimization task that generalizes graph isomorphism by aligning two unlabeled graphs to maximize overlapping…

Machine Learning · Computer Science 2025-05-20 Adrien Lagesse , Marc Lelarge

Subgraph isomorphism, also known as subgraph matching, is typically regarded as an NP-complete problem. This complexity is further compounded in practical applications where edge weights are real-valued and may be affected by measurement…

Machine Learning · Statistics 2025-06-24 Arpan Kusari , Wenbo Sun

Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect…

Machine Learning · Computer Science 2020-11-10 Emily Alsentzer , Samuel G. Finlayson , Michelle M. Li , Marinka Zitnik

The classic problem of exact subgraph matching returns those subgraphs in a large-scale data graph that are isomorphic to a given query graph, which has gained increasing importance in many real-world applications. In this paper, we propose…

Databases · Computer Science 2025-12-12 Yutong Ye , Xiang Lian , Mingsong Chen

Exact subgraph matching on large-scale graphs remains a challenging problem due to high computational complexity and distributed system constraints. Existing GNN-based path embedding (GNN-PE) frameworks achieve efficient exact matching on…

Databases · Computer Science 2026-04-21 Yu Wang , Hui Wang , Jiake Ge , Xin Wang

Graph Neural Networks (GNNs) have emerged as a powerful category of learning architecture for handling graph-structured data. However, existing GNNs typically ignore crucial structural characteristics in node-induced subgraphs, which thus…

Machine Learning · Computer Science 2023-06-13 Kaixuan Chen , Shunyu Liu , Tongtian Zhu , Tongya Zheng , Haofei Zhang , Zunlei Feng , Jingwen Ye , Mingli Song

Subgraph similarity search, one of the core problems in graph search, concerns whether a target graph approximately contains a query graph. The problem is recently touched by neural methods. However, current neural methods do not consider…

Machine Learning · Computer Science 2022-10-20 Linfeng Liu , Xu Han , Dawei Zhou , Li-Ping Liu

Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the…

Data Structures and Algorithms · Computer Science 2022-12-15 Jun Kawahara , Toshiki Saitoh , Hirokazu Takeda , Ryo Yoshinaka , Yui Yoshioka

Subgraph isomorphism is a well-known NP-hard problem which is widely used in many applications, such as social network analysis and knowledge graph query. Its performance is often limited by the inherent hardness. Several insightful works…

Databases · Computer Science 2021-04-21 Li Zeng , Yan Jiang , Weixin Lu , Lei Zou

Dense subgraph discovery is a fundamental problem in graph mining with a wide range of applications \cite{gionis2015dense}. Despite a large number of applications ranging from computational neuroscience to social network analysis, that take…

Social and Information Networks · Computer Science 2021-12-08 Tianyi Chen , Francesco Bonchi , David Garcia-Soriano , Atsushi Miyauchi , Charalampos E. Tsourakakis
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