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Quantum mechanical methods like Density Functional Theory (DFT) are used with great success alongside efficient search algorithms for studying kinetics of reactive systems. However, DFT is prohibitively expensive for large scale…

Computational Physics · Physics 2022-09-02 Mathias Schreiner , Arghya Bhowmik , Tejs Vegge , Peter Bjørn Jørgensen , Ole Winther

Here we describe a computational study undertaken in an effort to elucidate the reaction mechanisms behind the experimentally observed oxidations and hydrations catalyzed by graphene oxide (GO). Using the oxidation of benzyl alcohol to…

Materials Science · Physics 2012-11-13 Danil W. Boukhvalov , Daniel R. Dreyer , Christopher W. Bielawski , Young-Woo Son

Here we investigate whether well-known DFT-GGA errors in predicting the chemisorption energy ($E_{\rm chem}$) of CO on transition metal surfaces manifest in analogous NO chemisorption systems. To verify the occurrence of DFT-GGA…

Chemical Physics · Physics 2013-07-08 Xu Huang , Sara E. Mason

We present the incorporation of a surrogate Gaussian Process Regression (GPR) atomistic model to greatly accelerate the rate of convergence of classical Nudged Elastic Band (NEB) calculations. In our surrogate model approach, the cost of…

Computational Physics · Physics 2019-04-24 José A. Garrido Torres , Paul C. Jennings , Martin H. Hansen , Jacob R. Boes , Thomas Bligaard

The nudged elastic band (NEB) method is one of the most widely used techniques for determining minimum-energy reaction pathways and activation barriers between known initial and final states. However, conventional implementations face steep…

Computational Physics · Physics 2025-10-21 Qiuhan Jia , Jiuyang Shi , Jian Sun

The nuclear-electronic orbital (NEO) method is a well-established approach for treating nuclei quantum mechanically in molecular systems beyond the usual Born-Oppenheimer approximation. In this work, we present a strategy to implement the…

Computational Physics · Physics 2022-06-29 Jianhang Xu , Ruiyi Zhou , Zhen Tao , Christopher Malbon , Volker Blum , Sharon Hammes-Schiffer , Yosuke Kanai

Selective two-electron oxygen reduction reaction (ORR) offers a promising route for hydrogen peroxide synthesis, and defective sp2 carbon-based materials are attractive, low-cost electrocatalysts for this process. However, due to a wide…

We calculate properties like equilibrium lattice parameter, bulk modulus and monovacancy formation energy for nickel (Ni), iron (Fe) and chromium (Cr) using Kohn-Sham density functional theory (DFT). We compare relative performance of local…

Materials Science · Physics 2011-09-15 Prithwish Kumar Nandi , M. C. Valsakumar , Sharat Chandra , H. K. Sahu , C. S. Sundar

This work presents a Euler-Bernoulli beam finite element (FE) model to study the interlayer interaction mechanics of graphene nanoribbon (GNR) over a graphene substrate. The FE model is calibrated using molecular dynamics (MD) simulations…

Computational Physics · Physics 2025-09-11 Gourav Yadav , Aningi Mokhalingam , Roger A. Sauer , Shakti S. Gupta

Geometry optimization is an important part of both computational materials and surface science because it is the path to finding ground state atomic structures and reaction pathways. These properties are used in the estimation of…

Materials Science · Physics 2021-07-07 Yilin Yang , Omar A. Jimenez-Negron , John R. Kitchin

Density functional theory (DFT) is a cornerstone of computational chemistry and materials science, but its computational cost limits its use in large-scale and high-throughput applications. While machine learning has accelerated energy…

Chemical Physics · Physics 2026-03-18 Yingdi Jin , Xinming Qin , Ruichen Liu , Jie Liu , Zhenyu Li , Jinlong Yang

Heteroatom doping is an important method for engineering graphene nanoribbons (GNRs) because of its ability to modify electronic properties by introducing extra electrons or vacancies. However, precisely integrating oxygen atoms into the…

A central challenge in plasmonic upconversion is coupling between near-field engineering at the pump wavelength and local-density-of-optical-states (LDOS) engineering at the emission wavelengths. Here we show that a corrugated SU8/Au/Al2O3…

The DFT/vdW-WF2s1 method, recently developed to include the van der Waals interactions in the Density Functional Theory and describe adsorption processes on metal surfaces by taking metal-screening effects into account, is applied to the…

Materials Science · Physics 2015-06-11 Pier Luigi Silvestrelli , Alberto Ambrosetti

The performance of the dynamically bi-orthogonal (DBO) decomposition for the reduced order modeling of turbulence-chemistry interactions is assessed. DBO is an on-the-fly low-rank approximation technique, in which the instantaneous…

Fluid Dynamics · Physics 2022-01-07 Aidyn Aitzhan , Arash G. Nouri , Peyman Givi , Hessam Babaee

We present a reduced-cost implementation of the state-averaged driven similarity renormalization group (SA-DSRG) based on the frozen natural orbital (FNO) approach. The natural orbitals (NOs) are obtained by diagonalizing the one-body…

Chemical Physics · Physics 2023-12-13 Chenyang Li , Shuxian Mao , Renke Huang , Francesco A. Evangelista

Deep learning surrogate models have shown promise in solving partial differential equations (PDEs). Among them, the Fourier neural operator (FNO) achieves good accuracy, and is significantly faster compared to numerical solvers, on a…

Machine Learning · Computer Science 2024-05-03 Zongyi Li , Daniel Zhengyu Huang , Burigede Liu , Anima Anandkumar

We present GPR_calculator, a package based on Python and C++ programming languages to build an on-the-fly surrogate model using Gaussian Process Regression (GPR) to approximate expensive electronic structure calculations. The key idea is to…

Materials Science · Physics 2026-01-30 Isaac Onyango , Byungkyun Kang , Qiang Zhu

Reliable digital twins of lithium-ion batteries must achieve high physical fidelity with sub-millisecond speed. In this work, we benchmark three operator-learning surrogates for the Single Particle Model (SPM): Deep Operator Networks…

Machine Learning · Computer Science 2025-08-12 Amir Ali Panahi , Daniel Luder , Billy Wu , Gregory Offer , Dirk Uwe Sauer , Weihan Li

Proton transfer is central to many processes of chemical interest. The simulation of proton transfer dynamics requires the inclusion of nuclear quantum effects, such as zero-point energy, nuclear delocalization, and tunneling. Herein, we…

Chemical Physics · Physics 2026-03-19 Joseph A. Dickinson , Mathew Chow , Eno Paenurk , Sharon Hammes-Schiffer
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