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The growing importance of textual and relational systems has driven interest in enhancing large language models (LLMs) for graph-structured data, particularly Text-Attributed Graphs (TAGs), where samples are represented by textual…

Machine Learning · Computer Science 2025-01-28 Yuanfu Sun , Zhengnan Ma , Yi Fang , Jing Ma , Qiaoyu Tan

The integration of Large Language Models (LLMs) with Graph Representation Learning (GRL) marks a significant evolution in analyzing complex data structures. This collaboration harnesses the sophisticated linguistic capabilities of LLMs to…

Machine Learning · Computer Science 2024-02-12 Qiheng Mao , Zemin Liu , Chenghao Liu , Zhuo Li , Jianling Sun

Large language models (LLMs) are being increasingly explored for graph tasks. Despite their remarkable success in text-based tasks, LLMs' capabilities in understanding explicit graph structures remain limited, particularly with large…

Machine Learning · Computer Science 2024-10-31 Sambhav Khurana , Xiner Li , Shurui Gui , Shuiwang Ji

The reasoning process of Large Language Models (LLMs) is often plagued by hallucinations and missing facts in question-answering tasks. A promising solution is to ground LLMs' answers in verifiable knowledge sources, such as Knowledge…

Computation and Language · Computer Science 2026-02-26 Shiqi Yan , Yubo Chen , Ruiqi Zhou , Zhengxi Yao , Shuai Chen , Tianyi Zhang , Shijie Zhang , Wei Qiang Zhang , Yongfeng Huang , Haixin Duan , Yunqi Zhang

Despite their success in various domains, the growing dependence on GNNs raises a critical concern about the nature of the combinatorial reasoning underlying their predictions, which is often hidden within their black-box architectures.…

Machine Learning · Computer Science 2026-03-03 Yue Niu , Zhaokai Sun , Jiayi Yang , Xiaofeng Cao , Rui Fan , Xin Sun , Hanli Wang , Wei Ye

Graph mining is an important area in data mining and machine learning that involves extracting valuable information from graph-structured data. In recent years, significant progress has been made in this field through the development of…

Machine Learning · Computer Science 2024-12-30 Yuxin You , Zhen Liu , Xiangchao Wen , Yongtao Zhang , Wei Ai

Although Large Language Models (LLMs) have demonstrated remarkable progress, their proficiency in graph-related tasks remains notably limited, hindering the development of truly general-purpose models. Previous attempts, including…

Machine Learning · Computer Science 2025-08-20 Xiaojun Guo , Ang Li , Yifei Wang , Stefanie Jegelka , Yisen Wang

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

Machine Learning · Computer Science 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

Semantic reasoning aims to infer new knowledge from existing knowledge, with OWL ontologies serving as a standardized framework for organizing information. A key challenge in semantic reasoning is verifying ontology consistency. However,…

Artificial Intelligence · Computer Science 2025-04-29 Justin Mücke , Ansgar Scherp

Large Language Models (LLMs) have achieved impressive performance across a wide range of applications. However, they often suffer from hallucinations in knowledge-intensive domains due to their reliance on static pretraining corpora. To…

Information Retrieval · Computer Science 2026-02-10 Lihui Liu , Jiayuan Ding , Subhabrata Mukherjee , Carl J. Yang

Large Language Models (LLMs) promise to accelerate discovery by reasoning across the expanding scientific landscape. Yet, the challenge is no longer access to information but connecting it in meaningful, domain-spanning ways. In materials…

Artificial Intelligence · Computer Science 2026-02-10 Isabella A. Stewart , Tarjei Paule Hage , Yu-Chuan Hsu , Markus J. Buehler

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang

Large language models (LLMs) are increasingly used for text-rich graph machine learning tasks such as node classification in high-impact domains like fraud detection and recommendation systems. Yet, despite a surge of interest, the field…

Computation and Language · Computer Science 2026-03-03 Ben Finkelshtein , Silviu Cucerzan , Sujay Kumar Jauhar , Ryen White

Graph Retrieval Augmented Generation (GraphRAG) has garnered increasing recognition for its potential to enhance large language models (LLMs) by structurally organizing domain-specific corpora and facilitating complex reasoning. However,…

Computation and Language · Computer Science 2025-06-23 Yilin Xiao , Junnan Dong , Chuang Zhou , Su Dong , Qian-wen Zhang , Di Yin , Xing Sun , Xiao Huang

Given a graph with textual attributes, we enable users to `chat with their graph': that is, to ask questions about the graph using a conversational interface. In response to a user's questions, our method provides textual replies and…

Machine Learning · Computer Science 2024-05-28 Xiaoxin He , Yijun Tian , Yifei Sun , Nitesh V. Chawla , Thomas Laurent , Yann LeCun , Xavier Bresson , Bryan Hooi

Graph Retrieval-Augmented Generation (GraphRAG) has emerged as a promising paradigm that organizes external knowledge into structured graphs of entities and relations, enabling large language models (LLMs) to perform complex reasoning…

Computation and Language · Computer Science 2026-04-14 Jinyoung Park , Sanghyeok Lee , Omar Zia Khan , Hyunwoo J. Kim , Joo-Kyung Kim

Large Language Models (LLMs) have garnered considerable interest within both academic and industrial. Yet, the application of LLMs to graph data remains under-explored. In this study, we evaluate the capabilities of four LLMs in addressing…

Artificial Intelligence · Computer Science 2023-09-12 Chang Liu , Bo Wu

The paper introduces ExKG-LLM, a framework designed to automate the expansion of cognitive neuroscience knowledge graphs (CNKG) using large language models (LLMs). It addresses limitations in existing tools by enhancing accuracy,…

Artificial Intelligence · Computer Science 2025-07-09 Ali Sarabadani , Kheirolah Rahsepar Fard , Hamid Dalvand

Graph models are fundamental to data analysis in domains rich with complex relationships. Text-to-Graph-Query-Language (Text-to-GQL) systems act as a translator, converting natural language into executable graph queries. This capability…

Artificial Intelligence · Computer Science 2026-02-13 Songlin Lyu , Lujie Ban , Zihang Wu , Tianqi Luo , Jirong Liu , Chenhao Ma , Yuyu Luo , Nan Tang , Shipeng Qi , Heng Lin , Yongchao Liu , Chuntao Hong

GraphRAG conditions language models on subgraphs retrieved from knowledge graphs, encoded via message-passing GNNs. Because these encoders entangle node contributions through iterated neighborhood aggregation, there is no closed-form way to…

Machine Learning · Computer Science 2026-05-22 Yoav Kor Sade , Arvindh Arun , Rishi Puri , Steffen Staab , Maya Bechler-Speicher