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Related papers: RAPTOR-GEN: RApid PosTeriOR GENerator for Bayesian…

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Consider learning a generative model for time-series data. The sequential setting poses a unique challenge: Not only should the generator capture the conditional dynamics of (stepwise) transitions, but its open-loop rollouts should also…

Machine Learning · Statistics 2023-11-03 Daniel Jarrett , Ioana Bica , Mihaela van der Schaar

This paper studies the dynamic generator model for spatial-temporal processes such as dynamic textures and action sequences in video data. In this model, each time frame of the video sequence is generated by a generator model, which is a…

Machine Learning · Statistics 2018-12-31 Jianwen Xie , Ruiqi Gao , Zilong Zheng , Song-Chun Zhu , Ying Nian Wu

Excitement at the prospect of using data-driven generative models to sample configurational ensembles of biomolecular systems stems from the extraordinary success of these models on a diverse set of high-dimensional sampling tasks. Unlike…

Statistical Mechanics · Physics 2024-02-06 Shriram Chennakesavalu , Grant M. Rotskoff

Incorporating prior knowledge like lexical constraints into the model's output to generate meaningful and coherent sentences has many applications in dialogue system, machine translation, image captioning, etc. However, existing RNN-based…

Computation and Language · Computer Science 2019-11-20 Dayiheng Liu , Jie Fu , Qian Qu , Jiancheng Lv

Autoregressive (AR) models, common in sequence generation, are limited in many biological tasks such as de novo peptide sequencing and protein modeling by their unidirectional nature, failing to capture crucial global bidirectional token…

Machine Learning · Computer Science 2025-12-12 Xiang Zhang , Jiaqi Wei , Zijie Qiu , Sheng Xu , Zhi Jin , ZhiQiang Gao , Nanqing Dong , Siqi Sun

Pre-defined 3D object templates are widely used in 3D reconstruction of hand-object interactions. However, they often require substantial manual efforts to capture or source, and inherently restrict the adaptability of models to…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Yiyao Huang , Zhedong Zheng , Yu Ziwei , Yaxiong Wang , Tze Ho Elden Tse , Angela Yao

Trajectory prediction plays a vital role in automotive radar systems, facilitating precise tracking and decision-making in autonomous driving. Generative adversarial networks with the ability to learn a distribution over future trajectories…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Peiyuan Zhu , Fengxia Han , Hao Deng

To support mechanism online learning and facilitate digital twin development for biomanufacturing processes, this paper develops an efficient Bayesian inference approach for partially observed enzymatic stochastic reaction network (SRN), a…

Machine Learning · Statistics 2024-07-02 Wandi Xu , Wei Xie

Stochastic generators are essential to produce synthetic realizations that preserve target statistical properties. We propose GenFormer, a stochastic generator for spatio-temporal multivariate stochastic processes. It is constructed using a…

Machine Learning · Computer Science 2024-02-06 Haoran Zhao , Wayne Isaac Tan Uy

In this work, we propose a new deep learning model for Genomic Prediction (GP), which involves correlating genotypic data with phenotypic. The genotypes are typically fed as a sequence of characters to the 1D-Convolution Neural Network…

Machine Learning · Computer Science 2026-03-03 Kuldeep Pathak , Kapil Ahuja , Eric de Sturler

The integration of artificial intelligence (AI) in early-stage drug discovery offers unprecedented opportunities for exploring chemical space and accelerating hit-to-lead optimization. However, docking optimization in generative approaches…

Quantitative Methods · Quantitative Biology 2025-10-03 Ekaterina Podplutova , Anastasia Vepreva , Olga A. Konovalova , Vladimir Vinogradov , Dmitrii O. Shkil , Andrei Dmitrenko

Electron ptychography enables dose-efficient atomic-resolution imaging, but conventional reconstruction algorithms suffer from noise sensitivity, slow convergence, and extensive manual hyperparameter tuning for regularization, especially in…

Image and Video Processing · Electrical Eng. & Systems 2025-11-12 Arthur R. C. McCray , Stephanie M. Ribet , Georgios Varnavides , Colin Ophus

Gene regulatory networks are collections of genes that interact with one other and with other substances in the cell. By measuring gene expression over time using high-throughput technologies, it may be possible to reverse engineer, or…

Applications · Statistics 2011-09-08 Andrea Rau , Florence Jaffrézic , Jean-Louis Foulley , R. W. Doerge

Standard neural networks are often overconfident when presented with data outside the training distribution. We introduce HyperGAN, a new generative model for learning a distribution of neural network parameters. HyperGAN does not require…

Machine Learning · Computer Science 2020-07-16 Neale Ratzlaff , Li Fuxin

Stochastic generative models enable us to capture the geometric structure of a data manifold lying in a high dimensional space through a Riemannian metric in the latent space. However, its practical use is rather limited mainly due to…

Machine Learning · Statistics 2021-03-10 Georgios Arvanitidis , Bogdan Georgiev , Bernhard Schölkopf

We propose a framework - Prompt, Generate, Train (PGT) - to efficiently develop a generative question-answering model for open-book question-answering over a proprietary collection of text documents. The framework adapts a retriever…

Machine Learning · Computer Science 2023-07-27 C. S. Krishna

Deep generative models are becoming widely used across science and industry for a variety of purposes. A common challenge is achieving a precise implicit or explicit representation of the data probability density. Recent proposals have…

Machine Learning · Statistics 2021-11-05 Ramon Winterhalder , Marco Bellagente , Benjamin Nachman

Molecular transitions -- such as protein folding, allostery, and membrane transport -- are central to biology yet remain notoriously difficult to simulate. Their intrinsic rarity pushes them beyond reach of standard molecular dynamics,…

A Generative Adversarial Network (GAN) with generator $G$ trained to model the prior of images has been shown to perform better than sparsity-based regularizers in ill-posed inverse problems. Here, we propose a new method of deploying a…

Machine Learning · Computer Science 2019-10-25 Ankit Raj , Yuqi Li , Yoram Bresler

Next-generation sequencing technologies provide a revolutionary tool for generating gene expression data. Starting with a fixed RNA sample, they construct a library of millions of differentially abundant short sequence tags or "reads",…

Quantitative Methods · Quantitative Biology 2014-05-13 Dimitrios V. Vavoulis , Julian Gough
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