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Although High Performance Computing (HPC) users understand basic resource requirements such as the number of CPUs and memory limits, internal infrastructural utilization data is exclusively leveraged by cluster operators, who use it to…
The ability to design molecules while preserving similarity to a target molecule and/or property is crucial for various applications in drug discovery, chemical design, and biology. We introduce in this paper an efficient training-free…
Trusted execution environments (TEEs) for machine learning accelerators are indispensable in secure and efficient ML inference. Optimizing workloads through state-space exploration for the accelerator architectures improves performance and…
Machine Learning (ML) algorithms have been demonstrated to be capable of predicting impact parameter in heavy-ion collisions from transport model simulation events with perfect detector response. We extend the scope of ML application to…
Molecular dynamics simulations are a cornerstone in science, allowing to investigate from the system's thermodynamics to analyse intricate molecular interactions. In general, to create extended molecular trajectories can be a…
Repetitive laboratory testing unlikely to yield clinically useful information is a common practice that burdens patients and increases healthcare costs. Education and feedback interventions have limited success, while general test ordering…
Deep learning (DL) models can now run on microcontrollers (MCUs). Through neural architecture search (NAS), we can search DL models that meet the constraints of MCUs. Among various constraints, energy and latency costs of the model…
In this paper, a concurrent learning framework is developed for source search in an unknown environment using autonomous platforms equipped with onboard sensors. Distinct from the existing solutions that require significant computational…
Parallel applications can spend a significant amount of time performing I/O on large-scale supercomputers. Fast near-compute storage accelerators called burst buffers can reduce the time a processor spends performing I/O and mitigate I/O…
Modeling multimetallic systems efficiently enables faster prediction of desirable chemical properties and design of new materials. This work describes an initial implementation for performing multireference wave function method localized…
The training set of atomic configurations is key to the performance of any Machine Learning Force Field (MLFF) and, as such, the training set selection determines the applicability of the MLFF model for predictive molecular simulations.…
Computational chemistry allows researchers to experiment in sillico: by running a computer simulations of a biological or chemical processes of interest. Molecular dynamics with molecular mechanics model of interactions simulates N-body…
Frontier models increasingly adopt Mixture-of-Experts (MoE) architectures to achieve large-model performance at reduced cost. However, training MoE models on HPC platforms is hindered by large memory footprints, frequent large-scale…
Machine learning (ML) can process large sets of data generated from complex systems, which is ideal for classification tasks as often appeared in critical phenomena. Meanwhile ML techniques have been found effective in detecting critical…
Cumulative probability models (CPMs) are a robust alternative to linear models for continuous outcomes. However, they are not feasible for very large datasets due to elevated running time and memory usage, which depend on the sample size,…
In recent years, large-scale models have demonstrated state-of-the-art performance across various domains. However, training such models requires various techniques to address the problem of limited computing power and memory on devices…
Sparse matrices are an integral part of scientific simulations. As hardware evolves new sparse matrix storage formats are proposed aiming to exploit optimizations specific to the new hardware. In the era of heterogeneous computing, users…
We propose, implement, and experimentally evaluate a runtime middleware to support high-throughput execution on hybrid cluster machines of large-scale analysis applications. A hybrid cluster machine consists of computation nodes which have…
We investigate the learning of quantitative structure activity relationships (QSARs) as a case-study of meta-learning. This application area is of the highest societal importance, as it is a key step in the development of new medicines. The…
Prediction APIs offered for a fee are a fast-growing industry and an important part of machine learning as a service. While many such services are available, the heterogeneity in their price and performance makes it challenging for users to…