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Efficient extraction of spectral sequences and geospatial information has always been a hot topic in hyperspectral image classification. In terms of spectral sequence feature capture, RNN and Transformer have become mainstream…

Non-coding RNA (ncRNA) are RNA sequences which don't code for a gene but instead carry important biological functions. The task of ncRNA classification consists in classifying a given ncRNA sequence into its family. While it has been shown…

Molecular representation learning, a cornerstone for downstream tasks like molecular captioning and molecular property prediction, heavily relies on Graph Neural Networks (GNN). However, GNN suffers from the over-smoothing problem, where…

The effectiveness and efficiency of modeling complex spectral-spatial relations are both crucial for Hyperspectral image (HSI) classification. Most existing methods based on CNNs and transformers still suffer from heavy computational…

Hyperspectral image (HSI) classification remains challenging due to high spectral dimensionality, redundancy, and limited labeled data. Although convolutional neural networks (CNNs) and Vision Transformers (ViTs) achieve strong performance…

Classifying hyperspectral images is a difficult task in remote sensing, due to their complex high-dimensional data. To address this challenge, we propose HSIMamba, a novel framework that uses bidirectional reversed convolutional neural…

Abnormality detection in medical imaging is a critical task requiring both high efficiency and accuracy to support effective diagnosis. While convolutional neural networks (CNNs) and Transformer-based models are widely used, both face…

Hyperspectral image (HSI) classification plays a pivotal role in domains such as environmental monitoring, agriculture, and urban planning. However, it faces significant challenges due to the high-dimensional nature of the data and the…

Recurrent neural networks and Transformers have recently dominated most applications in hyperspectral (HS) imaging, owing to their capability to capture long-range dependencies from spectrum sequences. However, despite the success of these…

Hypergraphs serve as an effective model for depicting complex connections in various real-world scenarios, from social to biological networks. The development of Hypergraph Neural Networks (HGNNs) has emerged as a valuable method to manage…

Single-nucleus RNA sequencing (snRNA-seq) has significantly advanced our understanding of the disease etiology of neurodegenerative disorders. However, the low quality of specimens derived from postmortem brain tissues, combined with the…

Recent advances in multimodal learning have significantly improved cancer survival risk prediction. However, the joint prognostic potential of protein markers and histopathology images remains underexplored, largely due to the high cost and…

In the field of biomedical image analysis, the quest for architectures capable of effectively capturing long-range dependencies is paramount, especially when dealing with 3D image segmentation, classification, and landmark detection.…

Multi-modal 3D medical image segmentation aims to accurately identify tumor regions across different modalities, facing challenges from variations in image intensity and tumor morphology. Traditional convolutional neural network (CNN)-based…

Hyperspectral image (HSI) classification is pivotal in the remote sensing (RS) field, particularly with the advancement of deep learning techniques. Sequential models, adapted from the natural language processing (NLP) field such as…

Accurate organ and lesion segmentation is a critical prerequisite for computer-aided diagnosis. Convolutional Neural Networks (CNNs), constrained by their local receptive fields, often struggle to capture complex global anatomical…

In recent years, graph neural networks (GNNs) have gained significant attention for node classification tasks on graph-structured data. However, traditional GNNs primarily focus on adjacency relationships between nodes, often overlooking…

In the last decade, the discovery of noncoding RNA(ncRNA) has exploded. Classifying these ncRNA is critical todetermining their function. This thesis proposes a new methodemploying deep convolutional neural networks (CNNs) to classifyncRNA…

Medical image segmentation plays an important role in computer-aided diagnosis. Traditional convolution-based U-shape segmentation architectures are usually limited by the local receptive field. Existing vision transformers have been widely…

Recent advancements in transformers, specifically self-attention mechanisms, have significantly improved hyperspectral image (HSI) classification. However, these models often suffer from inefficiencies, as their computational complexity…