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Since Estimation of Distribution Algorithms (EDA) were proposed, many attempts have been made to improve EDAs' performance in the context of global optimization. So far, the studies or applications of multivariate probabilistic model based…

Neural and Evolutionary Computing · Computer Science 2011-11-10 Weishan Dong , Tianshi Chen , Peter Tino , Xin Yao

The electronic states of selected nanosystems are discussed within the Exact Diagonalization Ab Initio (EDABI) method. In particular, incipient Mott--Hubbard localization effects and associated with it properties analyzed in detail.

Strongly Correlated Electrons · Physics 2022-11-03 Józef Spałek

We explore the sensitivity of several core-level spectroscopic methods to the underlying atomistic structure by using the water molecule as our test system. We first define a metric that measures the magnitude of spectral change as a…

Chemical Physics · Physics 2022-06-22 Johannes Niskanen , Anton Vladyka , Joonas Niemi , Christoph J. Sahle

The response of water to electric fields is critical to the performance and stability of electrochemical devices, and the selectivity of enzymatic, atmospheric, and organic reactions. A key process in this context is the water…

Chemical Physics · Physics 2025-10-10 Yair Litman , Angelos Michaelides

Physical phenomena in the real world are often described by energy-based modeling theories, such as Hamiltonian mechanics or the Landau theory, which yield various physical laws. Recent developments in neural networks have enabled the…

Numerical Analysis · Mathematics 2020-11-03 Takashi Matsubara , Ai Ishikawa , Takaharu Yaguchi

Adiabatic mixed quantum/classical molecular dynamics simulations were used to generate snapshots of the hydrated electron (e-) in liquid water at 300 K. Water cluster anions that include two complete solvation shells centered on the e- were…

Data Analysis, Statistics and Probability · Physics 2016-09-28 Ilya A. Shkrob , William J. Glover , Ross E. Larsen , Benjamin J. Schwartz

This paper develops a comprehensive mathematical framework for energy-based modeling of physical systems, with particular emphasis on preserving fundamental structural properties throughout the modeling and discretization process. The…

Numerical Analysis · Mathematics 2025-12-11 M. H. M Rashid

Training energy-based models (EBMs) on discrete spaces is challenging because sampling over such spaces can be difficult. We propose to train discrete EBMs with energy discrepancy (ED), a novel type of contrastive loss functional which only…

Machine Learning · Statistics 2023-07-18 Tobias Schröder , Zijing Ou , Yingzhen Li , Andrew B. Duncan

We present a robust neural watermarking framework for scientific data integrity, targeting high-dimensional fields common in climate modeling and fluid simulations. Using a convolutional autoencoder, binary messages are invisibly embedded…

Machine Learning · Computer Science 2025-06-17 Krti Tallam

The molecular electrostatic potential (MEP) is a key quantity for describing and predicting intermolecular and ion-molecule interactions. Here, we assess the ability of machine-learning (ML) models to infer the MEP, based on the equivariant…

Chemical Physics · Physics 2026-01-16 Kadri Muuga , Lisanne Knijff , Chao Zhang

Using the velocity map imaging technique, we studied and characterized the process of Dissociative Electron Attachment (DEA) in polyatomic molecules like Water, Hydrogen Sulphide, Ammonia, Methane, Formic Acid and Propyl Amine. We present…

Chemical Physics · Physics 2010-07-30 N. Bhargava Ram , V. S. Prabhudesai , E. Krishnakumar

A key question for machine learning approaches in particle physics is how to best represent and learn from collider events. As an event is intrinsically a variable-length unordered set of particles, we build upon recent machine learning…

High Energy Physics - Phenomenology · Physics 2020-04-17 Patrick T. Komiske , Eric M. Metodiev , Jesse Thaler

Machine-learning models in chemistry - when based on descriptors of atoms embedded within molecules - face essential challenges in transferring the quality of predictions of local electronic structures and their associated properties across…

Chemical Physics · Physics 2024-09-27 Frederik Ø. Kjeldal , Janus J. Eriksen

Accurate protein structure prediction from amino-acid sequences is critical to better understanding the protein function. Recent advances in this area largely benefit from more precise inter-residue distance and orientation predictions,…

Machine Learning · Computer Science 2021-06-01 Jiaxiang Wu , Shitong Luo , Tao Shen , Haidong Lan , Sheng Wang , Junzhou Huang

Traffic flow forecasting is a crucial task in intelligent transport systems. Deep learning offers an effective solution, capturing complex patterns in time-series traffic flow data to enable the accurate prediction. However, deep learning…

Machine Learning · Computer Science 2024-11-07 Qiyuan Zhu , A. K. Qin , Hussein Dia , Adriana-Simona Mihaita , Hanna Grzybowska

We present a scalable machine learning (ML) model to predict local electronic properties such as on-site electron number and double occupation for disordered correlated electron systems. Our approach is based on the locality principle, or…

Strongly Correlated Electrons · Physics 2022-08-31 Yi-Hsuan Liu , Sheng Zhang , Puhan Zhang , Ting-Kuo Lee , Gia-Wei Chern

A machine learning (ML) based equivariant neural network for constructing distributed charge models (DCMs) of arbitrary resolution, DCM-net, is presented. DCMs efficiently and accurately model the anisotropy of the molecular electrostatic…

Chemical Physics · Physics 2026-02-10 Eric D. Boittier , Markus Meuwly

Machine learning models are changing the paradigm of molecular modeling, which is a fundamental tool for material science, chemistry, and computational biology. Of particular interest is the inter-atomic potential energy surface (PES). Here…

Computational Physics · Physics 2020-07-21 Linfeng Zhang , Jiequn Han , Han Wang , Wissam A. Saidi , Roberto Car , Weinan E

The energy paradigm, exemplified by Hopfield networks, offers a principled framework for memory in neural systems by interpreting dynamics as descent on an energy surface. While powerful for static associative memories, it falls short in…

Neural and Evolutionary Computing · Computer Science 2025-10-30 Arjun Karuvally , Pichsinee Lertsaroj , Terrence J. Sejnowski , Hava T. Siegelmann

A deep-learning-based closure model to address energy loss in low-dimensional surrogate models based on proper-orthogonal-decomposition (POD) modes is introduced. Using a transformer-encoder block with easy-attention mechanism, the model…