English
Related papers

Related papers: Learning Genetic Circuit Modules with Neural Netwo…

200 papers

In this work, we propose a composition/decomposition framework for adversarially training generative models on composed data - data where each sample can be thought of as being constructed from a fixed number of components. In our…

Machine Learning · Computer Science 2019-01-24 Yeu-Chern Harn , Zhenghao Chen , Vladimir Jojic

Neural networks (NNs) whose subnetworks implement reusable functions are expected to offer numerous advantages, including compositionality through efficient recombination of functional building blocks, interpretability, preventing…

Neural and Evolutionary Computing · Computer Science 2021-03-09 Róbert Csordás , Sjoerd van Steenkiste , Jürgen Schmidhuber

Although neural module networks have an architectural bias towards compositionality, they require gold standard layouts to generalize systematically in practice. When instead learning layouts and modules jointly, compositionality does not…

Machine Learning · Computer Science 2021-05-07 Ankit Vani , Max Schwarzer , Yuchen Lu , Eeshan Dhekane , Aaron Courville

This paper addresses the decomposition of biochemical networks into functional modules that preserve their dynamic properties upon interconnection with other modules, which permits the inference of network behavior from the properties of…

Molecular Networks · Quantitative Biology 2014-12-03 Hari Sivakumar , Stephen R. Proulx , João P. Hespanha

Neural networks have become an increasingly popular tool for solving many real-world problems. They are a general framework for differentiable optimization which includes many other machine learning approaches as special cases. In this…

Machine Learning · Computer Science 2019-07-22 Bruno Gavranović

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami

"Module networks" are a framework to learn gene regulatory networks from expression data using a probabilistic model in which coregulated genes share the same parameters and conditional distributions. We present a method to infer ensembles…

Quantitative Methods · Quantitative Biology 2009-04-09 Tom Michoel , Riet De Smet , Anagha Joshi , Kathleen Marchal , Yves Van de Peer

The current understanding of deep neural networks can only partially explain how input structure, network parameters and optimization algorithms jointly contribute to achieve the strong generalization power that is typically observed in…

Machine Learning · Computer Science 2021-01-28 Francesco Craighero , Fabrizio Angaroni , Alex Graudenzi , Fabio Stella , Marco Antoniotti

Compositional generalization is a basic and essential intellective capability of human beings, which allows us to recombine known parts readily. However, existing neural network based models have been proven to be extremely deficient in…

Artificial Intelligence · Computer Science 2020-10-27 Qian Liu , Shengnan An , Jian-Guang Lou , Bei Chen , Zeqi Lin , Yan Gao , Bin Zhou , Nanning Zheng , Dongmei Zhang

We present a detailed comparison of two types of sequence to sequence models trained to conduct a compositional task. The models are architecturally identical at inference time, but differ in the way that they are trained: our baseline…

Computation and Language · Computer Science 2019-06-07 Joris Baan , Jana Leible , Mitja Nikolaus , David Rau , Dennis Ulmer , Tim Baumgärtner , Dieuwke Hupkes , Elia Bruni

Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…

Other Quantitative Biology · Quantitative Biology 2024-11-25 Eran Agmon

In complex inferential tasks like question answering, machine learning models must confront two challenges: the need to implement a compositional reasoning process, and, in many applications, the need for this reasoning process to be…

Computer Vision and Pattern Recognition · Computer Science 2019-03-08 Ronghang Hu , Jacob Andreas , Trevor Darrell , Kate Saenko

It has been hypothesized that some form of "modular" structure in artificial neural networks should be useful for learning, compositionality, and generalization. However, defining and quantifying modularity remains an open problem. We cast…

Machine Learning · Computer Science 2022-06-23 Richard D. Lange , David S. Rolnick , Konrad P. Kording

Continual learning is essential for real-world deployment when there is a need to quickly adapt the model to new tasks without forgetting knowledge of old tasks. Existing work on continual sequence generation either always reuses existing…

Computation and Language · Computer Science 2022-04-06 Yanzhe Zhang , Xuezhi Wang , Diyi Yang

To solve a new task from minimal experience, it is essential to effectively reuse knowledge from previous tasks, a problem known as meta-learning. Compositional solutions, where common elements of computation are flexibly recombined into…

Machine Learning · Computer Science 2025-10-03 Jacob J. W. Bakermans , Pablo Tano , Reidar Riveland , Charles Findling , Alexandre Pouget

Parametrised quantum circuits are a central framework for near term quantum machine learning. However, it remains challenging to determine in advance how architectural choices, such as encoding strategies, gate placement, and entangling…

Quantum Physics · Physics 2026-04-07 Kyle James Stuart Campbell , Luigi Del Debbio , Petros Wallden

A formal description of the compositionality of neural networks is associated directly with the formal grammar-structure of the objects it seeks to represent. This formal grammar-structure specifies the kind of components that make up an…

Machine Learning · Computer Science 2020-10-07 Sai Raam Venkatraman , Ankit Anand , S. Balasubramanian , R. Raghunatha Sarma

Conditional computation and modular networks have been recently proposed for multitask learning and other problems as a way to decompose problem solving into multiple reusable computational blocks. We propose a new approach for learning…

Machine Learning · Computer Science 2021-07-26 Andrey Zhmoginov , Dina Bashkirova , Mark Sandler

The ability to continually learn, retain and deploy skills to accomplish goals is a key feature of intelligent and efficient behavior. However, the neural mechanisms facilitating the continual learning and flexible (re-)composition of…

Machine Learning · Computer Science 2025-10-24 Haozhe Shan , Sun Minni , Lea Duncker

A standard technique for understanding underlying dependency structures among a set of variables posits a shared conditional probability distribution for the variables measured on individuals within a group. This approach is often referred…

Machine Learning · Statistics 2014-05-13 Elham Azizi , James E. Galagan , Edoardo M. Airoldi