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Feature tracking is a common task in visualization applications, where methods based on topological data analysis (TDA) have successfully been applied in the past for feature definition as well as tracking. In this work, we focus on…

Graphics · Computer Science 2023-08-21 Emma Nilsson , Jonas Lukasczyk , Talha Bin Masood , Christoph Garth , Ingrid Hotz

In this paper, we propose a concept to design, track, and compare application-specific feature definitions expressed as sets of critical points. Our work has been inspired by the observation that in many applications a large variety of…

Machine Learning · Computer Science 2020-11-18 Wito Engelke , Talha Bin Masood , Jakob Beran , Rodrigo Caballero , Ingrid Hotz

Comparison of graph structure is a ubiquitous task in data analysis and machine learning, with diverse applications in fields such as neuroscience, cyber security, social network analysis, and bioinformatics, among others. Discovery and…

Applications · Statistics 2023-01-11 Peter Wills , Francois G. Meyer

This paper introduces a novel stability measure for edit distances between merge trees of piecewise linear scalar fields. We apply the new measure to various metrics introduced recently in the field of scalar field comparison in scientific…

Computational Geometry · Computer Science 2025-08-05 Florian Wetzels , Christoph Garth

Distance measures play an important role in shape classification and data analysis problems. Topological distances based on Reeb graphs and persistence diagrams have been employed to obtain effective algorithms in shape matching and scalar…

Machine Learning · Computer Science 2023-03-07 Yashwanth Ramamurthi , Amit Chattopadhyay

Merge trees are a type of topological descriptors that record the connectivity among the sublevel sets of scalar fields. They are among the most widely used topological tools in visualization. In this paper, we are interested in sketching a…

Computational Geometry · Computer Science 2021-06-01 Mingzhe Li , Sourabh Palande , Lin Yan , Bei Wang

CONTEXT. Attack treesare a recommended threat modeling tool, but there is no established method to compare them. OBJECTIVE. We aim to establish a method to compare "real" attack trees, based on both the structure of the tree itself and the…

Cryptography and Security · Computer Science 2025-03-05 Nathan D. Schiele , Olga Gadyatskaya

An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…

Data Structures and Algorithms · Computer Science 2015-02-10 Shihyen Chen

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Detecting small targets at range is difficult because there is not enough spatial information present in an image sub-region containing the target to use correlation-based methods to differentiate it from dynamic confusers present in the…

Computer Vision and Pattern Recognition · Computer Science 2021-02-15 Tegan Emerson , Sarah Tymochko , George Stantchev , Jason A. Edelberg , Michael Wilson , Colin C. Olson

Node similarity is a fundamental problem in graph analytics. However, node similarity between nodes in different graphs (inter-graph nodes) has not received a lot of attention yet. The inter-graph node similarity is important in learning a…

Databases · Computer Science 2016-02-17 Haohan Zhu , Xianrui Meng , George Kollios

Merge trees, contour trees, and Reeb graphs are graph-based topological descriptors that capture topological changes of (sub)level sets of scalar fields. Comparing scalar fields using their topological descriptors has many applications in…

Computational Geometry · Computer Science 2023-06-05 Fangfei Lan , Salman Parsa , Bei Wang

Due to long-distance correlation and powerful pretrained models, transformer-based methods have initiated a breakthrough in visual object tracking performance. Previous works focus on designing effective architectures suited for tracking,…

Computer Vision and Pattern Recognition · Computer Science 2023-09-18 Jie Zhao , Johan Edstedt , Michael Felsberg , Dong Wang , Huchuan Lu

Merge trees are a valuable tool in the scientific visualization of scalar fields; however, current methods for merge tree comparisons are computationally expensive, primarily due to the exhaustive matching between tree nodes. To address…

Machine Learning · Computer Science 2024-10-07 Yu Qin , Brittany Terese Fasy , Carola Wenk , Brian Summa

Merge trees are a common topological descriptor for data with a hierarchical component, such as terrains and scalar fields. The interleaving distance, in turn, is a common distance for comparing merge trees. However, the interleaving…

Computational Geometry · Computer Science 2025-01-13 Thijs Beurskens , Tim Ophelders , Bettina Speckmann , Kevin Verbeek

Metric learning has the aim to improve classification accuracy by learning a distance measure which brings data points from the same class closer together and pushes data points from different classes further apart. Recent research has…

Machine Learning · Computer Science 2018-05-21 Benjamin Paaßen

In this paper, we present a novel heuristic algorithm for the stable but NP-complete deformation-based edit distance on merge trees. Our key contribution is the introduction of a user-controlled look-ahead parameter that allows to trade off…

Computational Geometry · Computer Science 2025-01-13 Florian Wetzels , Heike Leitte , Christoph Garth

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

Data Structures and Algorithms · Computer Science 2015-05-22 Julien Lerouge , Zeina Abu-Aisheh , Romain Raveaux , Pierre Héroux , Sébastien Adam

We present a holistic, topology-based visualization technique for spatial time series data based on an adaptation of Fuzzy Contour Trees. Common analysis approaches for time dependent scalar fields identify and track specific features. To…

Human-Computer Interaction · Computer Science 2021-07-28 Anna-Pia Lohfink , Frederike Gartzky , Florian Wetzels , Luisa Vollmer , Christoph Garth

In this article, we propose tree edit distance with variables, which is an extension of the tree edit distance to handle trees with variables and has a potential application to measuring the similarity between mathematical formulas,…

Data Structures and Algorithms · Computer Science 2021-05-12 Tatsuya Akutsu , Tomoya Mori , Naotoshi Nakamura , Satoshi Kozawa , Yuhei Ueno , Thomas N. Sato