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Sparked by innovations in generative artificial intelligence (AI), the field of protein design has undergone a paradigm shift with an explosion of new models for optimizing existing enzymes or creating them from scratch. After more than one…

Biomolecules · Quantitative Biology 2026-02-04 Lasse Middendorf , Noelia Ferruz

With the rapid development of precision medicine, a large amount of health data (such as electronic health records, gene sequencing, medical images, etc.) has been produced. It encourages more and more interest in data-driven insight…

Computation and Language · Computer Science 2019-12-10 Sendong Zhao , Fei Wang

In healthcare, AI techniques are widely used for tasks like risk assessment and anomaly detection. Despite AI's potential as a valuable assistant, its role in complex medical data analysis often oversimplifies human-AI collaboration…

Human-Computer Interaction · Computer Science 2024-07-23 Yang Ouyang , Chenyang Zhang , He Wang , Tianle Ma , Chang Jiang , Yuheng Yan , Zuoqin Yan , Xiaojuan Ma , Chuhan Shi , Quan Li

Biomedical datasets are often modeled as knowledge graphs (KGs) because they capture the multi-relational, heterogeneous, and dynamic natures of biomedical systems. KG completion (KGC), can, therefore, help researchers make predictions to…

Artificial Intelligence · Computer Science 2023-07-18 Lauren Nicole DeLong , Ramon Fernández Mir , Zonglin Ji , Fiona Niamh Coulter Smith , Jacques D. Fleuriot

The reliability of clinical artificial intelligence (AI) depends on high-quality data, yet Electronic Health Records are often inconsistent with existing scientific knowledge. Current quality assessments are limited: they either focus on…

Machine Learning · Computer Science 2026-05-26 Irena Girshovitz , Atai Ambus , Moni Shahar , Ran Gilad-Bachrach

In clinical artificial intelligence (AI), graph representation learning, mainly through graph neural networks (GNNs), stands out for its capability to capture intricate relationships within structured clinical datasets. With diverse data --…

Machine Learning · Computer Science 2023-12-13 Ruth Johnson , Michelle M. Li , Ayush Noori , Owen Queen , Marinka Zitnik

Cognitive augmentation is a cornerstone in advancing education, particularly through personalized learning. However, personalizing extensive textual materials, such as narratives and academic textbooks, remains challenging due to their…

Human-Computer Interaction · Computer Science 2025-03-11 Ryugo Morita , Ko Watanabe , Jinjia Zhou , Andreas Dengel , Shoya Ishimaru

The rapid growth of biomedical literature and curated databases has made it increasingly difficult for researchers to systematically connect biomarker mechanisms to actionable drug combination hypotheses. We present AI Co-Scientist (CoDHy),…

Computation and Language · Computer Science 2026-03-03 Raneen Younis , Suvinava Basak , Lukas Chavez , Zahra Ahmadi

Data visualization has emerged as an effective tool for getting insights from massive datasets. Due to the hardness of manipulating the programming languages of data visualization, automatic data visualization generation from natural…

Computation and Language · Computer Science 2023-09-15 Yan Ge , Victor Junqiu Wei , Yuanfeng Song , Jason Chen Zhang , Raymond Chi-Wing Wong

We present BioRAGent, an interactive web-based retrieval-augmented generation (RAG) system for biomedical question answering. The system uses large language models (LLMs) for query expansion, snippet extraction, and answer generation while…

Computation and Language · Computer Science 2024-12-18 Samy Ateia , Udo Kruschwitz

The advent of Large Language Models (LLMs) and generative AI is fundamentally transforming information retrieval and processing on the Internet, bringing both great potential and significant concerns regarding content authenticity and…

Information Retrieval · Computer Science 2026-02-12 Michele Garetto , Alessandro Cornacchia , Franco Galante , Emilio Leonardi , Alessandro Nordio , Alberto Tarable

Data augmentation has been shown to effectively improve the performance of multimodal machine learning models. This paper introduces a generative model for data augmentation by leveraging the correlations among multiple modalities.…

Computer Vision and Pattern Recognition · Computer Science 2021-10-26 Zixu Wang , Yishu Miao , Lucia Specia

This paper focuses on enhancing human-agent communication by integrating spatial context into virtual agents' non-verbal behaviors, specifically gestures. Recent advances in co-speech gesture generation have primarily utilized data-driven…

Human-Computer Interaction · Computer Science 2024-08-09 Anna Deichler , Simon Alexanderson , Jonas Beskow

Access to high-quality medical data is often restricted due to privacy concerns, posing significant challenges for training artificial intelligence (AI) algorithms within Electronic Health Record (EHR) applications. In this study, prompt…

Artificial Intelligence · Computer Science 2025-04-30 Polycarp Nalela

Industrial computer vision systems often struggle with noise, material variability, and uncontrolled imaging conditions, limiting the effectiveness of classical edge detectors and handcrafted pipelines. In this work, we present a…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Liang Gong , Tommy , Wang , Sara Chaker , Yanchen Dong , Fouad Bousetouane , Brenden Morton , Mark Mendez

Our goal is to create an interactive natural language interface that efficiently and reliably learns from users to complete tasks in simulated robotics settings. We introduce a neural semantic parsing system that learns new high-level…

Computation and Language · Computer Science 2020-10-13 Siddharth Karamcheti , Dorsa Sadigh , Percy Liang

Medical dialogue generation aims to generate responses according to a history of dialogue turns between doctors and patients. Unlike open-domain dialogue generation, this requires background knowledge specific to the medical domain.…

Computation and Language · Computer Science 2023-03-16 Chen Tang , Hongbo Zhang , Tyler Loakman , Chenghua Lin , Frank Guerin

Language generation models' democratization benefits many domains, from answering health-related questions to enhancing education by providing AI-driven tutoring services. However, language generation models' democratization also makes it…

Computation and Language · Computer Science 2021-06-03 Paras Bhatt , Anthony Rios

Multi-modal data abounds in biomedicine, such as radiology images and reports. Interpreting this data at scale is essential for improving clinical care and accelerating clinical research. Biomedical text with its complex semantics poses…

As applications of generative AI become mainstream, it is important to understand what generative models are capable of producing, and the extent to which one can predictably control their outputs. In this paper, we propose a visualization…

Human-Computer Interaction · Computer Science 2024-07-01 Sangwon Jeong , Mingwei Li , Matthew Berger , Shusen Liu
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