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The shape of a molecule determines its physicochemical and biological properties. However, it is often underrepresented in standard molecular representation learning approaches. Here, we propose using the Euler Characteristic Transform…

Machine Learning · Computer Science 2025-07-08 Victor Toscano-Duran , Florian Rottach , Bastian Rieck

Instant machine learning predictions of molecular properties are desirable for materials design, but the predictive power of the methodology is mainly tested on well-known benchmark datasets. Here, we investigate the performance of machine…

A code smell is a surface indicator of an inherent problem in the system, most often due to deviation from standard coding practices on the developers part during the development phase. Studies observe that code smells made the code more…

Software Engineering · Computer Science 2021-08-11 Himanshu Gupta , Abhiram Anand Gulanikar , Lov Kumar , Lalita Bhanu Murthy Neti

Rapid, non-destructive characterization of molecular level chemistry for organic matter (OM) is experimentally challenging. Raman spectroscopy is one of the most widely used techniques for non-destructive chemical characterization, although…

Materials Science · Physics 2016-02-08 Yun Liu , Nicola Ferralis , L. Taras Bryndzia , Jeffrey C. Grossman

Machine Learning tools are nowadays widely applied extensively to the prediction of the properties of molecular materials, using datasets extracted from high-throughput computational models. In several cases of scientific and technological…

Materials Science · Physics 2021-02-10 Fabio Le Piane , Matteo Baldoni , Francesco Mercuri

Molecular dynamics simulations provide detailed trajectories at the atomic level, but extracting interpretable and robust insights from these high-dimensional data remains challenging. In practice, analyses typically rely on a single…

Machine Learning · Computer Science 2026-04-02 Axel Giottonini , Thomas Lemmin

In recent years, more machine learning algorithms have been applied to odor classification. These odor classification algorithms usually assume that the training datasets are static. However, for some odor recognition tasks, new odor…

Machine Learning · Computer Science 2019-04-30 Yu Cheng , Angus Wong , Kevin Hung , Zhizhong Li , Weitong Li , Jun Zhang

Convolutional Neural Networks (CNNs) have shown strong promise for analyzing scientific data from many domains including particle imaging detectors. However, the challenge of choosing the appropriate network architecture (depth, kernel…

Computer Vision and Pattern Recognition · Computer Science 2020-01-13 Duc Hoang , Jesse Hamer , Gabriel N. Perdue , Steven R. Young , Jonathan Miller , Anushree Ghosh

This research introduces a Machine Learning-centric approach to replicate olfactory experiences, validated through experimental quantification of perfume perception. Key contributions encompass a hybrid model connecting perfume molecular…

The olfactory sense measures the chemical composition of the environment using a diverse array of olfactory receptors. In vertebrates, the olfactory receptors reside in a mucus layer in the nasal cavity and can thus only detect odorants…

Biological Physics · Physics 2023-01-25 Swati Sen , David Zwicker

Artificial neural networks show promising performance in detecting correlations within data that are associated with specific outcomes. However, the black-box nature of such models can hinder the knowledge advancement in research fields by…

Machine Learning · Computer Science 2023-10-09 Jonas C. Ditz , Bernhard Reuter , Nico Pfeifer

The adaptability of the convolutional neural network (CNN) technique for aerodynamic meta-modeling tasks is probed in this work. The primary objective is to develop suitable CNN architecture for variable flow conditions and object geometry,…

Machine Learning · Statistics 2018-01-18 Yao Zhang , Woong-Je Sung , Dimitri Mavris

A mechanism is proposed for increasing selectivity of olfactory bulb projection neurons as compared to the olfactory receptor neurons, which could operate under low odor concentration, when the lateral inhibition mechanism becomes…

Neurons and Cognition · Quantitative Biology 2021-11-09 Alexander Vidybida

We consider nonparametric prediction with multiple covariates, in particular categorical or functional predictors, or a mixture of both. The method proposed bases on an extension of the Nadaraya-Watson estimator where a kernel function is…

Methodology · Statistics 2022-08-05 Leonie Selk , Jan Gertheiss

We show that by using intuitive and accessible molecular features it is possible to predict the temperature-dependent second virial coefficient of organic and inorganic compounds using Gaussian process regression. In particular, we built a…

Chemical Physics · Physics 2021-02-24 Miruna T. Cretu , Jesús Pérez-Ríos

Our proposed framework attempts to break the trade-off between performance and explainability by introducing an explainable-by-design convolutional neural network (CNN) based on the lateral inhibition mechanism. The ExplaiNet model consists…

Machine Learning · Computer Science 2024-11-04 Pantelis I. Kaplanoglou , Konstantinos Diamantaras

Understanding how atmospheric molecular clusters form and grow is key to resolving one of the biggest uncertainties in climate modelling: the formation of new aerosol particles. While quantum chemistry offers accurate insights into these…

Machine Learning · Computer Science 2025-09-16 Lauri Seppäläinen , Jakub Kubečka , Jonas Elm , Kai Puolamäki

The answers to many unsolved problems lie in the intractable chemical space of molecules and materials. Machine learning techniques are rapidly growing in popularity as a way to compress and explore chemical space efficiently. One of the…

Chemical Physics · Physics 2020-01-06 John E. Herr , Kevin Koh , Kun Yao , John Parkhill

Classifying pages or text lines into font categories aids transcription because single font Optical Character Recognition (OCR) is generally more accurate than omni-font OCR. We present a simple framework based on Convolutional Neural…

Computer Vision and Pattern Recognition · Computer Science 2017-08-15 Chris Tensmeyer , Daniel Saunders , Tony Martinez

Message passing neural networks have become a method of choice for learning on graphs, in particular the prediction of chemical properties and the acceleration of molecular dynamics studies. While they readily scale to large training data…

Machine Learning · Computer Science 2021-06-08 Kristof T. Schütt , Oliver T. Unke , Michael Gastegger
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