English
Related papers

Related papers: Exploring Synthesizable Chemical Space with Iterat…

200 papers

Generative models hold the promise of significantly expediting the materials design process when compared to traditional human-guided or rule-based methodologies. However, effectively generating high-quality periodic structures of materials…

Materials Science · Physics 2024-08-15 Anshuman Sinha , Shuyi Jia , Victor Fung

Existing Programming-By-Example (PBE) systems often rely on simplified benchmarks that fail to capture the high structural complexity-such as deeper nesting and frequent Unions-of real-world regexes. To overcome the resulting performance…

Programming Languages · Computer Science 2026-03-27 Seongmin Kim , Hyunjoon Cheon , Su-Hyeon Kim , Yo-Sub Han , Sang-Ki Ko

We propose a new view synthesis method via synthesizing a 3D neural field from both single or few-view input images. To address the ill-posed nature of the image-to-3D generation problem, we devise a two-stage method that involves a…

Computer Vision and Pattern Recognition · Computer Science 2024-12-20 Tung Do , Thuan Hoang Nguyen , Anh Tuan Tran , Rang Nguyen , Binh-Son Hua

We present an extension of our Molecular Transformer architecture combined with a hyper-graph exploration strategy for automatic retrosynthesis route planning without human intervention. The single-step retrosynthetic model sets a new state…

There remains an important need for the development of image reconstruction methods that can produce diagnostically useful images from undersampled measurements. In magnetic resonance imaging (MRI), for example, such methods can facilitate…

Image and Video Processing · Electrical Eng. & Systems 2021-06-28 Varun A. Kelkar , Sayantan Bhadra , Mark A. Anastasio

Iterative refinement methods based on a denoising-inversion cycle are powerful tools for enhancing the quality and control of diffusion models. However, their effectiveness is critically limited when combined with standard Classifier-Free…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Haosen Li , Wenshuo Chen , Shaofeng Liang , Lei Wang , Haozhe Jia , Yutao Yue

Chemical space exploration underlies drug discovery, yet most generative models treat chemical space as a fixed, implicitly learned distribution, focusing on sampling molecules rather than deliberately designing the space itself. We…

Synthesizability in small molecule generative design remains a bottleneck. Existing works that do consider synthesizability can output predicted synthesis routes for generated molecules. However, there has been minimal attention in…

Biomolecules · Quantitative Biology 2025-05-14 Jeff Guo , Víctor Sabanza-Gil , Zlatko Jončev , Jeremy S. Luterbacher , Philippe Schwaller

Exact inference in complex probabilistic models often incurs prohibitive computational costs. This challenge is particularly acute for autonomous agents in dynamic environments that require frequent, real-time belief updates. Existing…

Artificial Intelligence · Computer Science 2026-02-10 Simon Kohaut , Benedict Flade , Julian Eggert , Kristian Kersting , Devendra Singh Dhami

Deep learning algorithms require extensive data to achieve robust performance. However, data availability is often restricted in the medical domain due to patient privacy concerns. Synthetic data presents a possible solution to these…

Sequential dependencies present a fundamental bottleneck in deploying large-scale autoregressive models, particularly for real-time applications. While traditional optimization approaches like pruning and quantization often compromise model…

Computation and Language · Computer Science 2025-10-09 Yunhai Hu , Zining Liu , Zhenyuan Dong , Tianfan Peng , Bradley McDanel , Sai Qian Zhang

Synthesizability remains a critical bottleneck in generative molecular design. While recent advances have addressed synthesizability in 2D graphs, extending these constraints to 3D for geometry-based conditional generation remains largely…

Generative models see increasing use in computer-aided drug design. However, while performing well at capturing distributions of molecular motifs, they often produce synthetically inaccessible molecules. To address this, we introduce…

In silico tools are important for generating novel hypotheses and exploring alternatives in de novo metabolic pathway design. However, while many computational frameworks have been proposed for retrobiosynthesis, few successful examples of…

Machine Learning · Computer Science 2026-04-16 Peter Zhiping Zhang , Jeffrey D. Varner

Retrosynthesis is the task of breaking down a chemical compound recursively step-by-step into molecular precursors until a set of commercially available molecules is found. Consequently, the goal is to provide a valid synthesis route for a…

The application of generative models for experimental drug discovery campaigns is severely limited by the difficulty of designing molecules de novo that can be synthesized in practice. Previous works have leveraged Generative Flow Networks…

The disconnect between AI-generated molecules with desirable properties and their synthetic feasibility remains a critical bottleneck in computational discovery of drugs and materials. While generative AI has accelerated the proposal of…

Chemical Physics · Physics 2025-11-25 Shuan Chen , Gunwook Nam , Alan Aspuru-Guzik , Yousung Jung

While Multimodal Large Language Models have achieved human-like performance on many visual and textual reasoning tasks, their proficiency in fine-grained spatial understanding, such as route tracing on maps remains limited. Unlike humans,…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Artemis Panagopoulou , Aveek Purohit , Achin Kulshrestha , Soroosh Yazdani , Mohit Goyal

Simulating prospective magnetic resonance imaging (MRI) scans from a given individual brain image is challenging, as it requires accounting for canonical changes in aging and/or disease progression while also considering the individual…

Computer Vision and Pattern Recognition · Computer Science 2025-06-23 Jingru Fu , Yuqi Zheng , Neel Dey , Daniel Ferreira , Rodrigo Moreno

Path planning in complex environments is one of the key problems of artificial intelligence because it requires simultaneous understanding of the geometry of space and the global structure of the problem. In this paper, we explore the…

Artificial Intelligence · Computer Science 2026-02-24 Agnieszka Polowczyk , Alicja Polowczyk , Michał Wieczorek