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The phase diagram of the collapse of a two-dimensional infinite branched polymer interacting with the solvent and with itself through contact interactions is studied from the $q\to 1$ limit of an extension of the $q-$ states Potts model.…

Condensed Matter · Physics 2009-10-28 Malte Henkel , Flavio Seno

The melting transition of two-dimensional (2D) systems is a fundamental problem in condensed matter and statistical physics that has advanced significantly through the application of computational resources and algorithms. 2D systems…

Soft Condensed Matter · Physics 2017-04-12 Joshua A. Anderson , James Antonaglia , Jaime A. Millan , Michael Engel , Sharon C. Glotzer

Spatial distributions are presented that quantitatively capture how polymer properties (e.g., segment alignment, density, and potential energy) vary with distance from nascent polymer crystals (nuclei) in prototypical polyethylene melts. It…

Materials Science · Physics 2020-07-15 Kyle Wm. Hall , Simona Percec , Wataru Shinoda , Michael L. Klein

Molecules with complex internal structure in time-dependent periodic potentials are studied by using short Rubinstein-Duke model polymers as an example. We extend our earlier work on transport in stochastically varying potentials to cover…

Statistical Mechanics · Physics 2015-05-18 Janne Kauttonen , Juha Merikoski

Dendronized polymers consist of an elastic backbone with a set of iterated branch structures (dendrimers)attached at every base point of the backbone. The conformations of such molecules depend on the elastic deformation of the backbone and…

Chaotic Dynamics · Physics 2015-03-17 François Gay-Balmaz , Darryl D. Holm , Vakhtang Putkaradze , Tudor S. Ratiu

The polymer model framework is a classical tool from statistical mechanics that has recently been used to obtain approximation algorithms for spin systems on classes of bounded-degree graphs; examples include the ferromagnetic Potts model…

Data Structures and Algorithms · Computer Science 2022-03-29 Andreas Galanis , Leslie Ann Goldberg , James Stewart

The nonequilibrium structural and dynamical properties of semiflexible active polar polymers subject to linear flow are studied by numerical simulations. Filaments are confined in two dimensions and immersed in a fluid described by the…

Soft Condensed Matter · Physics 2026-04-23 A. Lamura , R. G. Winkler

We present the results of analytic calculations and numerical simulations of the behaviour of a new class of chain molecules which we call thick polymers. The concept of the thickness of such a polymer, viewed as a tube, is encapsulated by…

Soft Condensed Matter · Physics 2015-06-25 D. Marenduzzo , A. Flammini , A. Trovato , J. R. Banavar , A. Maritan

Polymers are an effective test-bed for studying topological constraints in condensed matter due to a wide array of synthetically-available chain topologies. When linear and ring polymers are blended together, emergent rheological properties…

Soft Condensed Matter · Physics 2024-04-25 Daniel L. Vigil , Ting Ge , Michael Rubinstein , Thomas C. O'Connor , Gary S. Grest

We have studied the transition in shape of two dimensional polyampholytes using Monte Carlo simulation. We observe that polymers with randomly charged monomers get into a globular shape at lower temperatures, provided that their total…

Condensed Matter · Physics 2007-05-23 M. R. Ejtehadi , S. Rouhani

During the life cycle of bacterial cells the non-mixing of the two ring-shaped daughter genomes is an important prerequisite for the cell division process. Mimicking the environments inside highly crowded biological cells, we study the…

Soft Condensed Matter · Physics 2014-12-24 Jaeoh Shin , Andrey G Cherstvy , Ralf Metzler

For various polymers with different topological structures we numerically evaluate the mean-square radius of gyration and the hydrodynamic radius systematically through simulation. We call polymers with nontrivial topology topological…

Soft Condensed Matter · Physics 2016-11-23 Erica Uehara , Tetsuo Deguchi

Polymeric particles are strong candidates for designing artificial materials capable of emulating the complex twisting-based functionality observed in biological systems. In this letter, we provide the first detailed investigation of the…

Soft Condensed Matter · Physics 2019-10-16 H. S. Ansell , D. S. Kim , R. D. Kamien , E. Katifori , T. Lopez-Leon

We present a unifying picture of the compact, dense and dilute phases of two-dimensional polymers. The lattice dependence of the scaling exponents for compact polymers is reconciled with their universality in the dense and dilute case. In…

Statistical Mechanics · Physics 2007-05-23 Jesper Lykke Jacobsen , Jane' Kondev

The irreversible adsorption of polymers to a two-dimensional solid surface is studied. An operator formalism is introduced for chemisorption from a polydisperse solution of polymers which transforms the analysis of the adsorption process to…

Chemical Physics · Physics 2009-11-13 Radek Erban , Jonathan Chapman

Polymer models are used to describe chromatin, which can be folded at different spatial scales by binding molecules. By folding, chromatin generates loops of various sizes. We present here a randomly cross-linked (RCL) polymer model, where…

Soft Condensed Matter · Physics 2017-05-12 Ofir Shukron , David Holcman

Blends of polymers of different topologies, such as ring and supercoiled, naturally occur in biology and often exhibit emergent viscoelastic properties coveted in industry. However, due to their complexity, along with the difficulty of…

In this paper, a transform approach is used for polycyclic and serial codes over finite local rings in the case that the defining polynomials have no multiple roots. This allows us to study them in terms of linear algebra and invariant…

Information Theory · Computer Science 2024-11-11 Maryam Bajalan , Edgar Martínez-Moro , Steve Szabo

We show that non-entangled polymers display an elastic-like behaviour at a macroscopic scale (probed at some 0.100 mm thickness) up to at least hundred degrees above the glass transition temperature. This observation, found under…

Soft Condensed Matter · Physics 2016-09-12 H Mendil , P Baroni , Laurence Noirez

Anisotropic shear relaxation is an interesting but rarely discussed issue in polymer dynamics under confinement [Abberton et al., Macromolecules, 48, 7631, 2015]. According to the earlier study of bead spring simulations for an unentangled…

Soft Condensed Matter · Physics 2024-06-17 Yuichi Masubuchi