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Interactive computational notebooks (e.g., Jupyter notebooks) are widely used in machine learning engineering (MLE) to program and share end-to-end pipelines, from data preparation to model training and evaluation. However, environment…

Software Engineering · Computer Science 2026-02-10 Bihui Jin , Kaiyuan Wang , Pengyu Nie

Mock assertions provide developers with a powerful means to validate program behaviors that are unobservable to test assertions. Despite their significance, they are rarely considered by automated test generation techniques. Effective…

Software Engineering · Computer Science 2025-03-26 Hengcheng Zhu , Valerio Terragni , Lili Wei , Shing-Chi Cheung , Jiarong Wu , Yepang Liu

Software testing framework can be stated as the process of verifying and validating that a computer program/application works as expected and meets the requirements of the user. Usually testing can be done manually or using tools. Manual…

Software Engineering · Computer Science 2013-07-15 K. Karnavel , V. Divya , Gnanakeerthika , P. Karthika

Generative AI agents, software systems powered by Large Language Models (LLMs), are emerging as a promising approach to automate cybersecurity tasks. Among the others, penetration testing is a challenging field due to the task complexity…

Cryptography and Security · Computer Science 2024-10-29 Luca Gioacchini , Marco Mellia , Idilio Drago , Alexander Delsanto , Giuseppe Siracusano , Roberto Bifulco

Extracting structured information from text, such as key-value pairs that could augment tabular data, is quite useful in many enterprise use cases. Although large language models (LLMs) have enabled numerous automated pipelines for…

Computation and Language · Computer Science 2025-07-30 Satyananda Kashyap , Sola Shirai , Nandana Mihindukulasooriya , Horst Samulowitz

Computational methods for predicting and designing biomolecular structures are increasingly powerful. While previous approaches relied on physics-based modeling, modern tools, such as AlphaFold2 in CASP14, leverage artificial intelligence…

Biomolecules · Quantitative Biology 2025-11-05 Michael Chungyoun , Gabe Au , Britnie Carpentier , Sreevarsha Puvada , Courtney Thomas , Jeffrey J. Gray

Automated single-cell annotation is difficult when the most abundant genes are not the most discriminative ones, or when a target state is poorly covered by a fixed reference atlas. GPTCelltype-style one-shot prompting allows large language…

Quantitative Methods · Quantitative Biology 2026-05-08 Yehui Yang , Zelin Zang , Xienan Zheng , Yuzhe Jia , Changxi Chi , Jingbo Zhou , Chang Yu , Jinlin Wu , Fuji Yang , Jiebo Luo , Zhen Lei , Stan Z. Li

Behavior of deep neural networks can be inconsistent between different versions. Regressions during model update are a common cause of concern that often over-weigh the benefits in accuracy or efficiency gain. This work focuses on…

Computation and Language · Computer Science 2021-05-10 Yuqing Xie , Yi-an Lai , Yuanjun Xiong , Yi Zhang , Stefano Soatto

Automated tools for solving GitHub issues are receiving significant attention by both researchers and practitioners, e.g., in the form of foundation models and LLM-based agents prompted with issues. A crucial step toward successfully…

Software Engineering · Computer Science 2026-01-06 Noor Nashid , Islem Bouzenia , Michael Pradel , Ali Mesbah

Large language models (LLMs) have shown great promise in automating data science workflows, but existing models still struggle with multi-step reasoning and tool use, which limits their effectiveness on complex data analysis tasks. To…

Artificial Intelligence · Computer Science 2025-12-04 Shuocheng Li , Yihao Liu , Silin Du , Wenxuan Zeng , Zhe Xu , Mengyu Zhou , Yeye He , Haoyu Dong , Shi Han , Dongmei Zhang

While Large Language Models (LLMs) have evolved into tool-using agents, they remain brittle in long-horizon interactions. Unlike mathematical reasoning where errors are often rectifiable via backtracking, tool-use failures frequently induce…

Artificial Intelligence · Computer Science 2026-03-17 Shengda Fan , Xuyan Ye , Yupeng Huo , Zhi-Yuan Chen , Yiju Guo , Shenzhi Yang , Wenkai Yang , Shuqi Ye , Jingwen Chen , Haotian Chen , Xin Cong , Yankai Lin

Background. Jupyter notebooks are one of the main tools used by data scientists. Notebooks include features (configuration scripts, markdown, images, etc.) that make them challenging to analyze compared to traditional software. As a result,…

Software Engineering · Computer Science 2025-07-28 Wenyuan Jiang , Diany Pressato , Harsh Darji , Thibaud Lutellier

Test case generation is an important activity, yet a time-consuming and laborious task. Recently, AthenaTest -- a deep learning approach for generating unit test cases -- is proposed. However, AthenaTest can generate less than one-fifth of…

Software Engineering · Computer Science 2023-02-22 Saranya Alagarsamy , Chakkrit Tantithamthavorn , Aldeida Aleti

Human annotation cost and time remain significant bottlenecks in Natural Language Processing (NLP), with test data annotation being particularly expensive due to the stringent requirement for low-error and high-quality labels necessary for…

Computation and Language · Computer Science 2026-03-24 Antonio Purificato , Maria Sofia Bucarelli , Andrea Bacciu , Amin Mantrach , Fabrizio Silvestri

Adapting Large Language Models (LLMs) to novel tasks and enhancing their overall capabilities often requires large, high-quality training datasets. Synthetic data, generated at scale, serves a valuable alternative when real-world data is…

Machine Learning · Computer Science 2025-05-05 Daria Gitman , Igor Gitman , Evelina Bakhturina

Computational notebooks (e.g., Jupyter, Google Colab) are widely used for interactive data science and machine learning. In those frameworks, users can start a session, then execute cells (i.e., a set of statements) to create variables,…

Databases · Computer Science 2025-03-12 Zhaoheng Li , Pranav Gor , Rahul Prabhu , Hui Yu , Yuzhou Mao , Yongjoo Park

Effective code documentation is essential for collaboration, comprehension, and long-term software maintainability, yet developers often neglect it due to its repetitive nature. Automated documentation generation has evolved from heuristic…

Software Engineering · Computer Science 2026-02-10 Mojtaba Mostafavi Ghahfarokhi , Hamed Jahantigh , Alireza Asadi , Abbas Heydarnoori

Model-based testing (MBT) is a method that supports the design and execution of test cases by models that specify the intended behaviors of a system under test. While systematic literature reviews on MBT in general exist, the state of the…

Software Engineering · Computer Science 2024-03-04 Waleed Abdeen , Xingru Chen , Michael Unterkalmsteiner

Standard multiple testing procedures are designed to report a list of discoveries, or suspected false null hypotheses, given the hypotheses' p-values or test scores. Recently there has been a growing interest in enhancing such procedures by…

Methodology · Statistics 2025-10-29 Jack Freestone , William Stafford Noble , Uri Keich

We present ABETS, an assertion-based, dynamic analyzer that helps diagnose errors in Maude programs. ABETS uses slicing to automatically create reduced versions of both a run's execution trace and executed program, reduced versions in which…

Logic in Computer Science · Computer Science 2016-08-05 M. Alpuente , D. Ballis , F. Frechina , J. Sapiña