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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

The article describes the structural and algorithmic relations between Cartesian trees and Lyndon Trees. This leads to a uniform presentation of the Lyndon table of a word corresponding to the Next Nearest Smaller table of a sequence of…

Data Structures and Algorithms · Computer Science 2017-12-27 Maxime Crochemore , Luis M. S. Russo

We discuss a notion of convergence for binary trees that is based on subtree sizes. In analogy to recent developments in the theory of graphs, posets and permutations we investigate some general aspects of the topology, such as a…

Combinatorics · Mathematics 2024-02-14 Rudolf Grübel

We describe the explicit form of a left greatest common divisor and a least common multiple of solutions of a solvable linear matrix equation over a commutative elementary divisor domain. We prove that these left greatest common divisor and…

General Mathematics · Mathematics 2020-11-11 Volodymyr P. Shchedryk

We construct an example of a subperiodic tree whose intermediate branching number is strictly less than the lower intermediate growth rate. This answers a question of Amir and Yang (2022) in the negative.

Probability · Mathematics 2024-02-06 Pengfei Tang

We study the size and structure of the largest common subtree (LCS) between two independent Bienaym\'e trees conditioned to have size $n$. When the trees are critical with finite $2$nd and $(2+\kappa)$th moment respectively for some…

Probability · Mathematics 2026-01-05 Omer Angel , Caelan Atamanchuk , Anna Brandenberger , Serte Donderwinkel , Robin Khanfir

Let $G$ be an undirected graph. We say that $G$ contains a ladder of length $k$ if the $2 \times (k+1)$ grid graph is an induced subgraph of $G$ that is only connected to the rest of $G$ via its four cornerpoints. We prove that if all the…

Combinatorics · Mathematics 2024-01-31 Steven Chaplick , Steven Kelk , Ruben Meuwese , Matus Mihalak , Georgios Stamoulis

We show that there exists a family of instances of the lot-sizing problem, such that any branch-and-bound tree that solves them requires an exponential number of nodes, even in the case when the branchings are performed on general split…

Optimization and Control · Mathematics 2021-12-09 Santanu S. Dey , Prachi Shah

We establish maximal trees and graphs for the difference of average distance and proximity proving thus the corresponding conjecture posed in [4]. We also establish maximal trees for the difference of average eccentricity and remoteness and…

Combinatorics · Mathematics 2020-10-22 Jelena Sedlar

This paper investigates some properties of the number of subtrees of a tree with given degree sequence. These results are used to characterize trees with the given degree sequence that have the largest number of subtrees, which generalizes…

Combinatorics · Mathematics 2012-09-04 Xiu-Mei Zhang , Xiao-Dong Zhang , Daniel Gray , Hua Wang

We consider finding a counterfactual explanation for a classification or regression forest, such as a random forest. This requires solving an optimization problem to find the closest input instance to a given instance for which the forest…

Machine Learning · Computer Science 2023-03-07 Miguel Á. Carreira-Perpiñán , Suryabhan Singh Hada

We introduce notions of linear reduction and linear equivalence of bijections for the purposes of study bijections between Young tableaux. Originating in Theoretical Computer Science, these notions allow us to give a unified view of a…

Combinatorics · Mathematics 2007-05-23 Igor Pak , Ernesto Vallejo

We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…

Combinatorics · Mathematics 2012-05-03 B. S. Kochkarev

Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…

Discrete Mathematics · Computer Science 2022-04-14 Florian Ingels , Romain Azaïs

The size of the largest common subtree (maximum agreement subtree) of two independent uniform random binary trees on $n$ leaves is known to be between orders $n^{1/8}$ and $n^{1/2}$. By a construction based on recursive splitting and…

Probability · Mathematics 2022-01-11 David J. Aldous

Graph isomorphism, subgraph isomorphism, and maximum common subgraphs are classical well-investigated objects. Their (parameterized) complexity and efficiently tractable cases have been studied. In the present paper, for a given set of…

Data Structures and Algorithms · Computer Science 2024-03-22 Dieter Rautenbach , Florian Werner

We show that there is a knot satisfying the property that for each minimal crossing number diagram of the knot and each single crossing of the diagram, changing the crossing results in a diagram for a knot whose unknotting number is at…

Geometric Topology · Mathematics 2018-01-03 Mark Brittenham , Susan Hermiller

In this paper we extend the theory of bidimensionality to two families of graphs that do not exclude fixed minors: map graphs and power graphs. In both cases we prove a polynomial relation between the treewidth of a graph in the family and…

Discrete Mathematics · Computer Science 2007-05-23 Erik D. Demaine , MohammadTaghi Hajiaghayi

Based on a reduction processing, we rewrite a hypergeometric term as the sum of the difference of a hypergeometric term and a reduced hypergeometric term (the reduced part, in short). We show that when the initial hypergeometric term has a…

Combinatorics · Mathematics 2019-07-23 Qing-Hu Hou , Yan-Ping Mu , Doron Zeilberger

We prove the Tree Alternative Conjecture for the topological minor relation: letting $[T]$ denote the equivalence class of $T$ under the topological minor relation we show that: $|[T]| = 1$ or $|[T]|\geq \aleph_0$ and $\forall r\in V(T)$,…

Combinatorics · Mathematics 2023-08-07 Jorge Bruno , Paul Szeptycki