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Jupyter Notebook is the tool of choice of many data scientists in the early stages of ML workflows. The notebook format, however, has been criticized for inducing bad programming practices; indeed, researchers have already shown that…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

Jupyter notebooks have become central in data science, integrating code, text and output in a flexible environment. With the rise of machine learning (ML), notebooks are increasingly used for prototyping and data analysis. However, due to…

Software Engineering · Computer Science 2025-08-12 Yiran Wang , Willem Meijer , José Antonio Hernández López , Ulf Nilsson , Dániel Varró

Visualisations drive all aspects of the Machine Learning (ML) Development Cycle but remain a vastly untapped resource by the research community. ML testing is a highly interactive and cognitive process which demands a human-in-the-loop…

Software Engineering · Computer Science 2023-05-23 Arumoy Shome , Luis Cruz , Arie van Deursen

Jupyter notebooks are widely used for machine learning (ML) prototyping. Yet, few debugging tools are designed for ML code in notebooks, partly, due to the lack of benchmarks. We introduce JunoBench, the first benchmark dataset of…

Software Engineering · Computer Science 2026-05-01 Yiran Wang , José Antonio Hernández López , Ulf Nilsson , Dániel Varró

Methodology bugs in scientific Python code produce plausible but incorrect results that traditional linters and static analysis tools cannot detect. Several research groups have built ML-specific linters, demonstrating that detection is…

Software Engineering · Computer Science 2026-03-19 Sergey V. Samsonau

Computational notebooks became indispensable tools for research-related development, offering unprecedented interactivity and flexibility in the development process. However, these benefits come at the cost of reproducibility and an…

Software Engineering · Computer Science 2024-05-06 Konstantin Grotov , Sergey Titov , Yaroslav Zharov , Timofey Bryksin

Meeting the rise of industry demand to incorporate machine learning (ML) components into software systems requires interdisciplinary teams contributing to a shared code base. To maintain consistency, reduce defects and ensure…

Software Engineering · Computer Science 2022-05-10 Jai Kannan , Scott Barnett , Luís Cruz , Anj Simmons , Akash Agarwal

Tool learning has generated widespread interest as a vital means of interaction between Large Language Models (LLMs) and the physical world. Current research predominantly emphasizes LLMs' capacity to utilize tools in well-structured…

Computation and Language · Computer Science 2024-09-24 Junjie Ye , Yilong Wu , Songyang Gao , Caishuang Huang , Sixian Li , Guanyu Li , Xiaoran Fan , Qi Zhang , Tao Gui , Xuanjing Huang

Machine learning developers frequently use interactive computational notebooks, such as Jupyter notebooks, to host code for data processing and model training. Jupyter notebooks provide a convenient tool for writing machine learning…

Software Engineering · Computer Science 2025-01-17 Bihui Jin , Jiayue Wang , Pengyu Nie

Context: Dynamic production environments make it challenging to maintain reliable machine learning (ML) systems. Runtime issues, such as changes in data patterns or operating contexts, that degrade model performance are a common occurrence…

Software Engineering · Computer Science 2025-09-19 Hira Naveed , Scott Barnett , Chetan Arora , John Grundy , Hourieh Khalajzadeh , Omar Haggag

Interactive computational notebooks (e.g., Jupyter notebooks) are widely used in machine learning engineering (MLE) to program and share end-to-end pipelines, from data preparation to model training and evaluation. However, environment…

Software Engineering · Computer Science 2026-02-10 Bihui Jin , Kaiyuan Wang , Pengyu Nie

We present our vision for developing an automated tool capable of translating visual properties observed in Machine Learning (ML) visualisations into Python assertions. The tool aims to streamline the process of manually verifying these…

Software Engineering · Computer Science 2024-01-17 Arumoy Shome , Luis Cruz , Arie van Deursen

Machine learning (ML) has gained much attention and been incorporated into our daily lives. While there are numerous publicly available ML projects on open source platforms such as GitHub, there have been limited attempts in filtering those…

Software Engineering · Computer Science 2023-03-14 Ratnadira Widyasari , Zhou Yang , Ferdian Thung , Sheng Qin Sim , Fiona Wee , Camellia Lok , Jack Phan , Haodi Qi , Constance Tan , Qijin Tay , David Lo

Machine learning (ML) codebases face unprecedented challenges in maintaining code quality and sustainability as their complexity grows exponentially. While traditional code smell detection tools exist, they fail to address ML-specific…

Software Engineering · Computer Science 2025-02-27 Karthik Shivashankar , Antonio Martini

Deep Learning (DL) libraries like TensorFlow and Pytorch simplify machine learning (ML) model development but are prone to bugs due to their complex design. Bug-finding techniques exist, but without precise API specifications, they produce…

Software Engineering · Computer Science 2026-02-04 Facundo Molina , M M Abid Naziri , Feiran Qin , Alessandra Gorla , Marcelo d'Amorim

This paper presents linear DML models for causal inference using the simplest Python code on a Jupyter notebook based on an Anaconda platform and compares the performance of different DML models. The results show that current Library API…

Software Engineering · Computer Science 2025-02-25 Shunxin Yao

Large language models excel at code generation but struggle with code linting, particularly in generalizing to unseen or evolving best practices beyond those observed during training. We introduce MetaLint, a meta-learning framework that…

Software Engineering · Computer Science 2026-04-21 Atharva Naik , Lawanya Baghel , Dhakshin Govindarajan , Darsh Agrawal , Yiqing Xie , Daniel Fried , Carolyn Rose

Jupyter notebooks enable developers to interleave code snippets with rich-text and in-line visualizations. Data scientists use Jupyter notebook as the de-facto standard for creating and sharing machine-learning based solutions, primarily…

Software Engineering · Computer Science 2024-06-12 Ashwin Prasad Shivarpatna Venkatesh , Samkutty Sabu , Mouli Chekkapalli , Jiawei Wang , Li Li , Eric Bodden

In software development environments, code quality is crucial. This study aims to assist Machine Learning (ML) engineers in enhancing their code by identifying and correcting Data Leakage issues within their models. Data Leakage occurs when…

Software Engineering · Computer Science 2025-09-22 Owen Truong , Terrence Zhang , Arnav Marchareddy , Ryan Lee , Jeffery Busold , Michael Socas , Eman Abdullah AlOmar

The reliable application of deep learning models to software engineering tasks hinges on high-quality training data. Yet, large-scale repositories inevitably introduce noisy or mislabeled examples that degrade both accuracy and robustness.…

Software Engineering · Computer Science 2025-12-05 Zixiao Zhao , Fatemeh H. Fard , Jie JW Wu
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