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We intend to identify relationships between cancer cases and pollutant emissions and attempt to understand whether cancer in children is typically located together with some specific chemical combinations or is independent. Co-location…

Revealing hidden causal variables alongside the underlying causal mechanisms is essential to the development of science. Despite the progress in the past decades, existing practice in causal discovery (CD) heavily relies on high-quality…

Machine Learning · Computer Science 2025-10-14 Chenxi Liu , Yongqiang Chen , Tongliang Liu , Mingming Gong , James Cheng , Bo Han , Kun Zhang

Soft particles such as microgels and core-shell particles can undergo significant and anisotropic deformations when adsorbed to a liquid interface. This, in turn, leads to a complex phase behavior upon compression. Here we develop a…

The complexity of many biological, social and technological systems stems from the richness of the interactions among their units. Over the past decades, a great variety of complex systems has been successfully described as networks whose…

The study of causal relationships between emotions and causes in texts has recently received much attention. Most works focus on extracting causally related clauses from documents. However, none of these works has considered that the causal…

Computation and Language · Computer Science 2023-11-29 Xinhong Chen , Zongxi Li , Yaowei Wang , Haoran Xie , Jianping Wang , Qing Li

A natural extension of the descriptors used in the Spectral Neighbor Analysis Potential (SNAP) method is derived to treat atomic interactions in chemically complex systems. Atomic environment descriptors within SNAP are obtained from a…

Chemical Physics · Physics 2020-09-09 Mary Alice Cusentino , Mitchell A. Wood , Aidan P. Thompson

In document-level relation extraction, entities may appear multiple times in a document, and their relationships can shift from one context to another. Accurate prediction of the relationship between two entities across an entire document…

Computation and Language · Computer Science 2025-08-01 Nilesh , Atul Gupta , Avinash C Panday

Active many-body systems composed of many interacting degrees of freedom often operate out of equilibrium, giving rise to non-trivial emergent behaviors which can be functional in both evolved and engineered contexts. This naturally…

Soft Condensed Matter · Physics 2023-11-29 Sumit Sinha , Vishaal Krishnan , L Mahadevan

The number of published research papers has experienced exponential growth in recent years, which makes it crucial to develop new methods for efficient and versatile information extraction and knowledge discovery. To address this need, we…

Information Retrieval · Computer Science 2023-06-09 Yamei Tu , Rui Qiu , Han-Wei Shen

Imaging methods used in modern neuroscience experiments are quickly producing large amounts of data capable of providing increasing amounts of knowledge about neuroanatomy and function. A great deal of information in these datasets is…

Quantitative Methods · Quantitative Biology 2017-01-25 William Gray Roncal , Eva L Dyer , Doga Gürsoy , Konrad Kording , Narayanan Kasthuri

Large language models internalize enormous parametric knowledge during pre-training. Concurrently, realistic applications necessitate external contextual knowledge to aid models on the underlying tasks. This raises a crucial dilemma known…

Artificial Intelligence · Computer Science 2024-07-29 Xiaowei Yuan , Zhao Yang , Yequan Wang , Shengping Liu , Jun Zhao , Kang Liu

Recent empirical evidence has shown that in many real-world systems, successfully represented as networks, interactions are not limited to dyads, but often involve three or more agents at a time. These data are better described by…

Physics and Society · Physics 2021-04-01 Federico Musciotto , Federico Battiston , Rosario N. Mantegna

Revealing the implicit semantic relation between the constituents of a noun-compound is important for many NLP applications. It has been addressed in the literature either as a classification task to a set of pre-defined relations or by…

Computation and Language · Computer Science 2018-05-08 Vered Shwartz , Ido Dagan

Computational synthesis planning approaches have achieved recent success in organic chemistry, where tabulated synthesis procedures are readily available for supervised learning. The syntheses of inorganic materials, however, exist…

Computation and Language · Computer Science 2017-11-29 Sheshera Mysore , Edward Kim , Emma Strubell , Ao Liu , Haw-Shiuan Chang , Srikrishna Kompella , Kevin Huang , Andrew McCallum , Elsa Olivetti

The usage of multilayer complex networks for the analysis of correlations among environmental variables (such as O3 and NO2 concentrations from the photochemical smog) is investigated in this work. The mentioned technique is called…

Atmospheric and Oceanic Physics · Physics 2023-11-21 R. Carmona-Cabezas , J. Gomez-Gomez , A. B. Ariza-Villaverde , E. Gutierrez de Rave , F. J. Jimenez-Hornero

We introduced a methodology to efficiently exploit natural-language expressed biomedical knowledge for repurposing existing drugs towards diseases for which they were not initially intended. Leveraging on developments in Computational…

Quantitative Methods · Quantitative Biology 2014-06-17 Ruggero Gramatica , T. Di Matteo , Stefano Giorgetti , Massimo Barbiani , Dorian Bevec , Tomaso Aste

One of the emerging techniques in node classification in heterogeneous graphs is to restrict message aggregation to pre-defined, semantically meaningful structures called metapaths. This work is the first attempt to incorporate attention…

Machine Learning · Computer Science 2024-12-31 Calder Katyal

The scientific literature's exponential growth makes it increasingly challenging to navigate and synthesize knowledge across disciplines. Large language models (LLMs) are powerful tools for understanding scientific text, but they fail to…

Computation and Language · Computer Science 2025-05-30 Abhipsha Das , Nicholas Lourie , Siavash Golkar , Mariel Pettee

New text as data techniques offer a great promise: the ability to inductively discover measures that are useful for testing social science theories of interest from large collections of text. We introduce a conceptual framework for making…

Machine Learning · Statistics 2018-02-08 Naoki Egami , Christian J. Fong , Justin Grimmer , Margaret E. Roberts , Brandon M. Stewart

Main aim of this topical issue is to report recent advances in noisy nonequilibrium processes useful to describe the dynamics of ecological systems and to address the mechanisms of spatio-temporal pattern formation in ecology both from the…

Biological Physics · Physics 2009-11-13 Astero Provata , Igor M. Sokolov , Bernardo Spagnolo