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The mathematical formalisms used to model biological systems induce both latent and ambiguous assumptions that can limit or distort their representational capabilities. Developing formalisms that can represent systems more precisely is…

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Cellular uptake of nanoplastics is instrumental in their environmental accumulation and transfer to humans through the food chain. Despite extensive studies using spherical plastic nanoparticles, the influence of the morphological…

Soft Condensed Matter · Physics 2023-08-29 Xin Yong , Ke Du

Drug repurposing has attracted increasing attention from both the pharmaceutical industry and the research community. Many existing computational drug repurposing methods rely on preclinical data (e.g., chemical structures, drug targets),…

Quantitative Methods · Quantitative Biology 2020-07-28 Qianlong Wen , Ruoqi Liu , Ping Zhang

Interpretations of a single sentence can vary, particularly when its context is lost. This paper aims to simulate how readers perceive content with varying toxicity levels by generating diverse interpretations of out-of-context sentences.…

Computation and Language · Computer Science 2026-04-17 Maria Mihaela Trusca , Liesbeth Allein

Answering natural language questions on knowledge graphs (KGQA) remains a great challenge in terms of understanding complex questions via multi-hop reasoning. Previous efforts usually exploit large-scale entity-related text corpora or…

Computation and Language · Computer Science 2022-09-05 Zile Qiao , Wei Ye , Tong Zhang , Tong Mo , Weiping Li , Shikun Zhang

The design of sustainable materials requires access to materials performance and sustainability data from literature corpus in an organized, structured and automated manner. Natural language processing approaches, particularly large…

Strategic diagrams and co-word analysis are widely employed to examine the conceptual structure of scientific domains and their development over time. Yet a structural inconsistency characterises dominant longitudinal implementations:…

Social and Information Networks · Computer Science 2026-03-09 Massimo Aria , Luca D'Aniello , Michelangelo Misuraca , Maria Spano

We employ statistical physics and information-theoretic methods to quantify the dependencies between key atmospheric pollutants and meteorological variables across multiple Indian cities. To capture both linear and nonlinear relationships,…

Physics and Society · Physics 2025-08-26 Suchismita Banerjee , Koyena Ghosh , Moumita De , Urna Basu , Banasri Basu

Modern computer-assisted synthesis planning (CASP) systems show promises at generating chemically valid reaction steps but struggle to incorporate strategic considerations such as convergent assembly, protecting group minimization, and…

Artificial Intelligence · Computer Science 2025-12-02 Daniel Armstrong , Zlatko Jončev , Andres M Bran , Philippe Schwaller

Qualitative causal relationships compactly express the direction, dependency, temporal constraints, and monotonicity constraints of discrete or continuous interactions in the world. In everyday or academic language, we may express…

Machine Learning · Computer Science 2021-08-31 Scott E. Friedman , Ian H. Magnusson , Sonja M. Schmer-Galunder

Combining multi-spectral satellite data and machine learning has been suggested as a method for monitoring plastic pollutants in the ocean environment. Recent studies have made theoretical progress regarding the identification of marine…

Image and Video Processing · Electrical Eng. & Systems 2023-05-03 Henry Booth , Wanli Ma , Oktay Karakus

The growing complexity of factual claims in real-world scenarios presents significant challenges for automated fact verification systems, particularly in accurately aggregating and reasoning over multi-hop evidence. Existing approaches…

Artificial Intelligence · Computer Science 2025-06-10 Liwen Zheng , Chaozhuo Li , Haoran Jia , Xi Zhang

Multimodal information-gathering settings, where users collaborate with AI in dynamic environments, are increasingly common. These involve complex processes with textual and multimodal interactions, often requiring additional structural…

Existing studies have investigated the tendency of autoregressive language models to generate contexts that exhibit undesired biases and toxicity. Various debiasing approaches have been proposed, which are primarily categorized into…

Computation and Language · Computer Science 2022-05-03 Yoon A Park , Frank Rudzicz

We introduce a novel graph-based framework for alleviating key challenges in distantly-supervised relation extraction and demonstrate its effectiveness in the challenging and important domain of biomedical data. Specifically, we propose a…

Machine Learning · Computer Science 2024-04-08 Hao Zhang , Yang Liu , Xiaoyan Liu , Tianming Liang , Gaurav Sharma , Liang Xue , Maozu Guo

Objective: Disease knowledge graphs are a way to connect, organize, and access disparate information about diseases with numerous benefits for artificial intelligence (AI). To create knowledge graphs, it is necessary to extract knowledge…

Machine Learning · Computer Science 2022-09-01 Yucong Lin , Keming Lu , Sheng Yu , Tianxi Cai , Marinka Zitnik

Analyzing large complex image collections in domains like forensics, accident investigation, or social media analysis involves interpreting intricate, overlapping relationships among images. Traditional clustering and classification methods…

Graphics · Computer Science 2025-10-24 Floris Gisolf , Zeno J. M. H. Geradts , Marcel Worring

Combination therapies have become the standard of care for diseases such as cancer, tuberculosis, malaria and HIV. However, the combinatorial set of available multi-drug treatments creates a challenge in identifying effective combination…

Computation and Language · Computer Science 2022-05-06 Aryeh Tiktinsky , Vijay Viswanathan , Danna Niezni , Dana Meron Azagury , Yosi Shamay , Hillel Taub-Tabib , Tom Hope , Yoav Goldberg

Nature has inspired various ground-breaking technological developments in applications ranging from robotics to aerospace engineering and the manufacturing of medical devices. However, accessing the information captured in scientific…

Computation and Language · Computer Science 2020-05-27 Ruben Kruiper , Julian F. V. Vincent , Jessica Chen-Burger , Marc P. Y. Desmulliez , Ioannis Konstas

Cross-domain scientific synthesis requires connecting mechanistic explanations across fragmented literature, a capability that remains challenging for both retrieval-based systems and unconstrained language models. While recent work has…

Computation and Language · Computer Science 2026-01-16 Sauhard Dubey