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Teaching large language models (LLMs) to use tools is crucial for improving their problem-solving abilities and expanding their applications. However, effectively using tools is challenging because it requires a deep understanding of tool…

Machine Learning · Computer Science 2025-06-27 Jingwei Wang , Zai Zhang , Hao Qian , Chunjing Gan , Binbin Hu , Ziqi Liu , Zhiqiang Zhang , Jun Zhou , Bin Shi , Bo Dong

The rapid growth of electronic health record (EHR) datasets opens up promising opportunities to understand human diseases in a systematic way. However, effective extraction of clinical knowledge from the EHR data has been hindered by its…

Machine Learning · Computer Science 2022-06-06 Yuesong Zou , Ahmad Pesaranghader , Aman Verma , David Buckeridge , Yue Li

The rapid evolution of communication technologies has led to an explosion of standards, rendering traditional expert-dependent consultation methods inefficient and slow. To address this challenge, we propose \textbf{KG2QA}, a question…

Computation and Language · Computer Science 2025-10-16 Zhongze Luo , Weixuan Wan , Tianya Zhang , Dan Wang , Xiaoying Tang

Large Language Models (LLMs) provide flexible natural language processing capabilities, while knowledge graphs (KGs) offer explicit and structured knowledge. Integrating these two in a complementary manner enables the development of…

Computation and Language · Computer Science 2026-05-12 Shusaku Egami , Aoi Ohta , Tomoki Tsujimura , Masaki Asada , Tatsuya Ishigaki , Ken Fukuda , Masahiro Hamasaki , Hiroya Takamura

Despite improved digital access to scholarly knowledge in recent decades, scholarly communication remains exclusively document-based. In this form, scholarly knowledge is hard to process automatically. In this paper, we present the first…

One of the significant barriers to the training of statistical models on knowledge graphs is the difficulty that scientists have in finding the best input data to address their prediction goal. In addition to this, a key challenge is to…

Artificial Intelligence · Computer Science 2023-11-22 Mattia Fumagalli , Marco Boffo , Daqian Shi , Mayukh Bagchi , Fausto Giunchiglia

The role of pharmacists is evolving from medicine dispensing to delivering comprehensive pharmaceutical services within multidisciplinary healthcare teams. Central to this shift is access to accurate, up-to-date medicinal product…

Artificial Intelligence · Computer Science 2025-06-24 Lizzy Farrugia , Lilian M. Azzopardi , Jeremy Debattista , Charlie Abela

Retrieval of information from graph-structured knowledge bases represents a promising direction for improving the factuality of LLMs. While various solutions have been proposed, a comparison of methods is difficult due to the lack of…

Machine Learning · Computer Science 2025-12-05 Alberto Cattaneo , Carlo Luschi , Daniel Justus

To tackle the problem of domain-specific knowledge scarcity within large language models (LLMs), knowledge graph-retrievalaugmented method has been proven to be an effective and efficient technique for knowledge infusion. However, existing…

Computation and Language · Computer Science 2024-06-07 Zhouyu Jiang , Ling Zhong , Mengshu Sun , Jun Xu , Rui Sun , Hui Cai , Shuhan Luo , Zhiqiang Zhang

Biomedical datasets are often modeled as knowledge graphs (KGs) because they capture the multi-relational, heterogeneous, and dynamic natures of biomedical systems. KG completion (KGC), can, therefore, help researchers make predictions to…

Artificial Intelligence · Computer Science 2023-07-18 Lauren Nicole DeLong , Ramon Fernández Mir , Zonglin Ji , Fiona Niamh Coulter Smith , Jacques D. Fleuriot

Electronic health records (EHRs) enable strong clinical prediction, but explanations are often coarse and hard to use for patient-level decisions. We propose a knowledge graph (KG)-guided chain-of-thought (CoT) framework for visit-level…

Artificial Intelligence · Computer Science 2026-03-03 Ruiyu Wang , Tuan Vinh , Ran Xu , Yuyin Zhou , Jiaying Lu , Carl Yang , Francisco Pasquel

Knowledge graphs (KGs) have become the preferred technology for representing, sharing and adding knowledge to modern AI applications. While KGs have become a mainstream technology, the RDF/SPARQL-centric toolset for operating with them at…

The "RNA world" represents a novel frontier for the study of fundamental biological processes and human diseases and is paving the way for the development of new drugs tailored to the patient's biomolecular characteristics. Although…

The task of multi-hop link prediction within knowledge graphs (KGs) stands as a challenge in the field of knowledge graph analysis, as it requires the model to reason through and understand all intermediate connections before making a…

Computation and Language · Computer Science 2025-06-17 Dong Shu , Tianle Chen , Mingyu Jin , Chong Zhang , Mengnan Du , Yongfeng Zhang

Knowledge graph (KG) is an abstraction that can be extracted from text corpora and used for in-depth reasoning. Prior work has leveraged KGs to fine-tune language models (LMs), enabling domain-specific superintelligence. In this work, we…

Computation and Language · Computer Science 2026-05-28 Jake Stephen , Niraj K. Jha

Drug discovery and development is a complex and costly process. Machine learning approaches are being investigated to help improve the effectiveness and speed of multiple stages of the drug discovery pipeline. Of these, those that use…

Artificial Intelligence · Computer Science 2022-09-27 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Andreas Bender , Charles Tapley Hoyt , William L Hamilton

Large language models (LLMs) have recently emerged as powerful tools, finding many medical applications. LLMs' ability to coalesce vast amounts of information from many sources to generate a response-a process similar to that of a human…

We present a comprehensive benchmark dataset for Knowledge Graph Question Answering in Materials Science (KGQA4MAT), with a focus on metal-organic frameworks (MOFs). A knowledge graph for metal-organic frameworks (MOF-KG) has been…

Knowledge Graphs (KGs) are foundational to applications such as search, question answering, and recommendation. Conventional knowledge graph construction methods are predominantly static, rely ing on a single-step construction from a fixed…

Artificial Intelligence · Computer Science 2026-03-23 Weidong Bao , Yilin Wang , Ruyu Gao , Fangling Leng , Yubin Bao , Ge Yu

Large Language Models (LLMs) excel in many natural language processing tasks but often exhibit factual inconsistencies in knowledge-intensive settings. Integrating external knowledge resources, particularly knowledge graphs (KGs), provides…

Computation and Language · Computer Science 2026-02-17 Shuai Wang , Yinan Yu