Related papers: Dorst-Smeulders Coding for Arbitrary Binary Words
Dynamic time warping distance (DTW) is a widely used distance measure between time series. The best known algorithms for computing DTW run in near quadratic time, and conditional lower bounds prohibit the existence of significantly faster…
We study the task, for a given language $L$, of enumerating the (generally infinite) sequence of its words, without repetitions, while bounding the delay between two consecutive words. To allow for delay bounds that do not depend on the…
Two finite words $u$ and $v$ are called abelian equivalent if each letter occurs equally many times in both $u$ and $v$. The abelian closure $\mathcal{A}(\mathbf{x})$ of an infinite word $\mathbf{x}$ is the set of infinite words…
Let $A_q$ be a $q$-letter alphabet and $w$ be a right infinite word on this alphabet. A subword of $w$ is a block of consecutive letters of $w$. The subword complexity function of $w$ assigns to each positive integer $n$ the number $f_w(n)$…
Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. For example, edit distance of two strings of length $n$ can be solved in $O(n^2/w)$ time. In a reasonable…
The Longest Common Subsequence (LCS) is a fundamental string similarity measure, and computing the LCS of two strings is a classic algorithms question. A textbook dynamic programming algorithm gives an exact algorithm in quadratic time, and…
The Burrows-Wheeler Transform (BWT) serves as the basis for many important sequence indexes. On very large datasets (e.g. genomic databases), classical BWT construction algorithms are often infeasible because they usually need to have the…
In this paper, we consider the problem of constructing optimal average-length binary codes under the constraint that each codeword must contain at most $D$ ones, where $D$ is a given input parameter. We provide an $O(n^2D)$-time complexity…
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
A string $w$ is called a minimal absent word (MAW) for another string $T$ if $w$ does not occur in $T$ but the proper substrings of $w$ occur in $T$. For example, let $\Sigma = \{\mathtt{a, b, c}\}$ be the alphabet. Then, the set of MAWs…
The Burrows-Wheeler Transform (BWT) is a word transformation introduced in 1994 for Data Compression. It has become a fundamental tool for designing self-indexing data structures, with important applications in several area in science and…
An overlap-free (or $\beta$-free) word $w$ over a fixed alphabet $\Sigma$ is extremal if every word obtained from $w$ by inserting a single letter from $\Sigma$ at any position contains an overlap (or a factor of exponent at least $\beta$,…
We prove that a uniformly random automaton with $n$ states on a 2-letter alphabet has a synchronizing word of length $O(n^{1/2}\log n)$ with high probability (w.h.p.). That is to say, w.h.p. there exists a word $\omega$ of such length, and…
This paper presents a stochastic algorithm for iterative error control decoding. We show that the stochastic decoding algorithm is an approximation of the sum-product algorithm. When the code's factor graph is a tree, as with trellises, the…
For $n,d,w \in \mathbb{N}$, let $A(n,d,w)$ denote the maximum size of a binary code of word length $n$, minimum distance $d$ and constant weight $w$. Schrijver recently showed using semidefinite programming that $A(23,8,11)=1288$, and the…
Regular episturmian words are episturmian words whose directive words have a regular and restricted form making them behave more like Sturmian words than general episturmian words. We present a method to evaluate the initial nonrepetitive…
We study the IS-algorithm, a well-known linear-time algorithm for computing the suffix array of a word. This algorithm relies on transforming the input word $w$ into another word, called the reduced word of $w$, that will be at least twice…
In this paper, we analyze the periodic factors of Sturmian words for the findings to lead to a linear-time algorithm for the computation of runs in this class of words which, to our best knowledge, is an open problem in literature.
Efficient optimal prefix coding has long been accomplished via the Huffman algorithm. However, there is still room for improvement and exploration regarding variants of the Huffman problem. Length-limited Huffman coding, useful for many…
Burrows-Wheeler transform (BWT) is an invertible text transformation that, given a text $T$ of length $n$, permutes its symbols according to the lexicographic order of suffixes of $T$. BWT is one of the most heavily studied algorithms in…