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Graph Foundation Models (GFMs) are emerging as a significant research topic in the graph domain, aiming to develop graph models trained on extensive and diverse data to enhance their applicability across various tasks and domains.…

Machine Learning · Computer Science 2024-06-03 Haitao Mao , Zhikai Chen , Wenzhuo Tang , Jianan Zhao , Yao Ma , Tong Zhao , Neil Shah , Mikhail Galkin , Jiliang Tang

Modern language models have historically relied on two dominant design choices: subword tokenization and autoregressive (AR) ordering. These design decisions bake in priors that dictate a model's learning. Recently, two alternative…

We view molecular optimization as a graph-to-graph translation problem. The goal is to learn to map from one molecular graph to another with better properties based on an available corpus of paired molecules. Since molecules can be…

Machine Learning · Computer Science 2019-01-30 Wengong Jin , Kevin Yang , Regina Barzilay , Tommi Jaakkola

Graph Neural Networks (GNNs) have achieved great success in various graph mining tasks.However, drastic performance degradation is always observed when a GNN is stacked with many layers. As a result, most GNNs only have shallow…

Machine Learning · Computer Science 2022-06-10 Wentao Zhang , Zeang Sheng , Ziqi Yin , Yuezihan Jiang , Yikuan Xia , Jun Gao , Zhi Yang , Bin Cui

Graph Convolutional Networks (GCNs) are known to suffer from performance degradation as the number of layers increases, which is usually attributed to over-smoothing. Despite the apparent consensus, we observe that there exists a…

Machine Learning · Computer Science 2021-10-29 Weilin Cong , Morteza Ramezani , Mehrdad Mahdavi

Graph alignment, the problem of identifying corresponding nodes across multiple graphs, is fundamental to numerous applications. Most existing unsupervised methods embed node features into latent representations to enable cross-graph…

Machine Learning · Computer Science 2025-09-30 Maysam Behmanesh , Erkan Turan , Maks Ovsjanikov

Graph foundation models (GFMs), pretrained on massive graph data, have transformed graph machine learning by supporting general-purpose reasoning across diverse graph tasks and domains. Existing GFMs pretrained with fixed-hop subgraph…

Machine Learning · Computer Science 2026-05-12 Haokun Liu , Zezhong Ding , Xike Xie

Vision-Language Models (VLMs) achieve outstanding performance, yet their huge model size severely hinders deployment on edge devices with limited resources. As an efficient model compression technique, vector quantization (VQ) excels in…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Zhong Wang , Zukang Xu , Xing Hu , Dawei Yang

Many loss functions in representation learning are invariant under a continuous symmetry transformation. For example, the loss function of word embeddings (Mikolov et al., 2013) remains unchanged if we simultaneously rotate all word and…

Machine Learning · Statistics 2020-07-21 Robert Bamler , Stephan Mandt

The goal of knowledge graph completion (KGC) is to predict missing links in a KG using trained facts that are already known. In recent, pre-trained language model (PLM) based methods that utilize both textual and structural information are…

Artificial Intelligence · Computer Science 2023-11-09 Sang-Hyun Je , Wontae Choi , Kwangjin Oh

In node classification tasks, graph convolutional neural networks (GCNs) have demonstrated competitive performance over traditional methods on diverse graph data. However, it is known that the performance of GCNs degrades with increasing…

Machine Learning · Computer Science 2022-11-29 Yujun Yan , Milad Hashemi , Kevin Swersky , Yaoqing Yang , Danai Koutra

Graph neural networks (GNN) suffer from severe inefficiency. It is mainly caused by the exponential growth of node dependency with the increase of layers. It extremely limits the application of stochastic optimization algorithms so that the…

Machine Learning · Computer Science 2024-04-23 Hongyuan Zhang , Yanan Zhu , Xuelong Li

Large Language Models (LLMs) face significant accuracy degradation due to insufficient reasoning ability when dealing with complex and abstract tasks. Thought structures such as Chain of Thought (CoT) and Tree of Thought (ToT) focus on…

Computation and Language · Computer Science 2025-09-29 Fengxiao Tang , Yufeng Li , Zongzong Wu , Ming Zhao

Cross-modal image-text retrieval is challenging because of the diverse possible associations between content from different modalities. Traditional methods learn a single-vector embedding to represent semantics of each sample, but struggle…

Computer Vision and Pattern Recognition · Computer Science 2025-06-27 Hani Alomari , Anushka Sivakumar , Andrew Zhang , Chris Thomas

Answering questions that require reading texts in an image is challenging for current models. One key difficulty of this task is that rare, polysemous, and ambiguous words frequently appear in images, e.g., names of places, products, and…

Computer Vision and Pattern Recognition · Computer Science 2020-04-01 Difei Gao , Ke Li , Ruiping Wang , Shiguang Shan , Xilin Chen

Optimal transport (OT) is a powerful geometric tool used to compare and align probability measures following the least effort principle. Despite its widespread use in machine learning (ML), OT problem still bears its computational burden,…

Machine Learning · Computer Science 2023-08-14 Oliver Struckmeier , Ievgen Redko , Anton Mallasto , Karol Arndt , Markus Heinonen , Ville Kyrki

Genomic language models (gLMs) have transformed computational biology, achieving state-of-the-art performance across genomic tasks. Yet a fundamental question threatens the foundation of this success: do these models learn the mechanistic…

Genomics · Quantitative Biology 2026-04-09 Bryan Cheng , Jasper Zhang

Multimodal retrieval, which seeks to retrieve relevant content across modalities such as text or image, supports applications from AI search to contents production. Despite the success of separate-encoder approaches like CLIP align…

Computation and Language · Computer Science 2025-10-20 Qiyu Wu , Shuyang Cui , Satoshi Hayakawa , Wei-Yao Wang , Hiromi Wakaki , Yuki Mitsufuji

Generative self-supervised learning on graphs, particularly graph masked autoencoders, has emerged as a popular learning paradigm and demonstrated its efficacy in handling non-Euclidean data. However, several remaining issues limit the…

Machine Learning · Computer Science 2024-02-14 Yijun Tian , Chuxu Zhang , Ziyi Kou , Zheyuan Liu , Xiangliang Zhang , Nitesh V. Chawla

Commonsense question answering is a crucial task that requires machines to employ reasoning according to commonsense. Previous studies predominantly employ an extracting-and-modeling paradigm to harness the information in KG, which first…

Machine Learning · Computer Science 2024-11-12 Boci Peng , Yongchao Liu , Xiaohe Bo , Sheng Tian , Baokun Wang , Chuntao Hong , Yan Zhang