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Biomolecules, such as proteins and RNAs, can phase separate in the cytoplasm of cells to form biomolecular condensates. Such condensates are liquid-like droplets that can wet biological surfaces such as membranes. Many molecules that…

Soft Condensed Matter · Physics 2024-09-04 Xueping Zhao , Susanne Liese , Alf Honigmann , Frank Jülicher , Christoph A. Weber

This paper presents a phase-field model for simulating the three-dimensional deformation of vesicle membranes, incorporating area-difference elasticity, with constraints on bulk volume and surface area. We develop efficient numerical…

Numerical Analysis · Mathematics 2025-11-19 Yihong Liang , Emine Celiker , Ping Lin

The deformation of an elastic micro-capsule in an infinite shear flow is studied numerically using a spectral method. The shape of the capsule and the hydrodynamic flow field are expanded into smooth basis functions. Analytic expressions…

Soft Condensed Matter · Physics 2008-09-03 S. Kessler , R. Finken , U. Seifert

We present some results of recent calculations of rigid rod-like particles in shear flow, based on the Doi model. This is an ideal model system for exhibiting the generic behavior of shear-thinning fluids (polymer solutions, wormlike…

Soft Condensed Matter · Physics 2015-06-25 Peter D. Olmsted , C-Y David Lu

We use molecular dynamics simulations to study the behavior of a compressible Lennard-Jones fluid in simple shear flow in a two-dimensional nanochannel. The system is equilibrated in the fluid phase close to the triple point at which gas,…

Soft Condensed Matter · Physics 2017-03-31 Madhu Priya , Yitzhak Rabin

We employ a multi-phase smoothed particle hydrodynamics (SPH) method to study droplet dynamics in shear flow. With an extensive range of Reynolds number, capillary number, wall confinement, and density/viscosity ratio between the droplet…

Fluid Dynamics · Physics 2023-07-07 Kuiliang Wang , Hong Liang , Chong Zhao , Xin Bian

We investigate the occurrence of shear banding in nematogenic fluids under planar Couette flow, based on mesoscopic dynamical equations for the orientational order parameter and the shear stress. We focus on parameter values where the…

Soft Condensed Matter · Physics 2016-05-20 Rodrigo Lugo-Frias , Henning Reinken , Sabine H. L. Klapp

Models of active nematics in biological systems normally require complexity arising from the hydrodynamics involved at the microscopic level as well as the viscoelastic nature of the system. Here we show that a minimal, space-independent,…

Soft Condensed Matter · Physics 2022-06-27 Emmanuel L. C. VI M. Plan , Huong Le Thi , Julia M. Yeomans , Amin Doostmohammadi

Wrinkling instabilities of thin elastic sheets can be used to generate periodic structures over a wide range of length scales. Viscosity of the thin elastic sheet or its surrounding medium has been shown to be responsible for dynamic…

Soft Condensed Matter · Physics 2024-01-25 Veit Krause , Axel Voigt

This contribution presents a diffuse framework for modeling cracks in heterogeneous media. Interfaces are depicted by static phase-fields. This concept allows the use of non-conforming meshes. Another phase-field is used to describe the…

Materials Science · Physics 2020-05-11 Arne Claus Hansen-Dörr , Franz Dammaß , René de Borst , Markus Kästner

We present a novel Monte Carlo simulation of the phase separation dynamics of a model fluid membrane. Such a phase segregation induces shape changes of the membrane and results in local `budding' under favourable conditions. We present a…

Condensed Matter · Physics 2007-05-23 P. B. Sunil Kumar , Madan Rao

The dynamics of amphiphilic films deposited on a solid surface is analyzed for the case when shear oscillations of the solid surface are excited. The two cases of surface- and bulk shear waves are studied with film exposed to gas or to a…

Condensed Matter · Physics 2009-10-30 M. V. Voinova , M. Jonson , B. Kasemo

Shear-flow-induced structure formation in surfactant-water mixtures is investigated numerically using a meshless-membrane model in combination with a particle-based hydrodynamics simulation approach for the solvent. At low shear rates,…

Soft Condensed Matter · Physics 2013-07-02 Hayato Shiba , Hiroshi Noguchi , Gerhard Gompper

Living systems are chiral on multiple scales, from constituent biopolymers to large scale morphology, and their active mechanics is both driven by chiral components and serves to generate chiral morphologies. We describe the mechanics of…

Soft Condensed Matter · Physics 2023-07-03 Sami C. Al-Izzi , Gareth P. Alexander

Complex fluids exhibit a variety of exotic flow behaviours under high stresses, such as shear thickening and shear jamming. Rheology is a powerful tool to characterise these flow behaviours over the bulk of the fluid. However, this…

Soft Condensed Matter · Physics 2022-06-09 Phalguni Shah , Srishti Arora , Michelle M. Driscoll

Cell plasma membranes display a dramatically rich structural complexity characterized by functional sub-wavelength domains with specific lipid and protein composition. Under favorable experimental conditions, patterned morphologies can also…

Soft Condensed Matter · Physics 2018-10-02 Nicolas Destainville , Manoel Manghi , Julie Cornet

Vesicles or biological cells under simultaneous shear and electric field can be encountered in dielectrophoretic devices or devices used for continuous flow electrofusion or electroporation. In this work, the dynamics of a vesicle subjected…

Soft Condensed Matter · Physics 2018-03-21 Kumari Priti Sinha , Rochish M Thaokar

Bound vesicles subject to lateral forces such as arising from shear flow are investigated theoretically by combining a lubrication analysis of the bound part with a scaling approach to the global motion. A minor inclination of the bound…

Soft Condensed Matter · Physics 2009-10-31 Udo Seifert

We present a novel computational modeling framework to numerically investigate fluid-structure interaction in viscous fluids using the phase field embedding method. Each rigid body or elastic structure immersed in the incompressible viscous…

Fluid Dynamics · Physics 2021-09-16 Qi Hong , Qi Wang

The morphogenesis of cells and tissues involves an interplay between chemical signals and active forces on their surrounding surface layers. The complex interaction of hydrodynamics and material flows on such active surfaces leads to…

Cell Behavior · Quantitative Biology 2023-06-30 Sebastian Aland , Claudia Wohlgemuth