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Distance-based metrics, such as the Hausdorff distance (HD), are widely used to validate segmentation performance in (bio)medical imaging. However, their implementation is complex, and critical differences across open-source tools remain…

Computer Vision and Pattern Recognition · Computer Science 2025-08-01 Gasper Podobnik , Tomaz Vrtovec

In response to a concerning trend of selectively emphasizing metrics in medical image segmentation (MIS) studies, we introduce \texttt{seg-metrics}, an open-source Python package for standardized MIS model evaluation. Unlike existing…

Computer Vision and Pattern Recognition · Computer Science 2024-03-14 Jingnan Jia , Marius Staring , Berend C. Stoel

Mesh deformation plays a pivotal role in many 3D vision tasks including dynamic simulations, rendering, and reconstruction. However, defining an efficient discrepancy between predicted and target meshes remains an open problem. A prevalent…

Computer Vision and Pattern Recognition · Computer Science 2024-03-19 Tung Le , Khai Nguyen , Shanlin Sun , Kun Han , Nhat Ho , Xiaohui Xie

The assessment of segmentation quality plays a fundamental role in the development, optimization, and comparison of segmentation methods which are used in a wide range of applications. With few exceptions, quality assessment is performed…

Computer Vision and Pattern Recognition · Computer Science 2025-04-02 Niklas Rottmayer , Claudia Redenbach

This paper presents a distance function between sets based on an average of distances between their elements. The distance function is a metric if the sets are non-empty finite subsets of a metric space. It can be applied to produce various…

Metric Geometry · Mathematics 2011-09-13 Osamu Fujita

The Hausdorff distance is a measure of (dis-)similarity between two sets which is widely used in various applications. Most of the applied literature is devoted to the computation for sets consisting of a finite number of points. This has…

Metric Geometry · Mathematics 2020-09-22 Daniel Kraft

We present spd-metrics-id, a Python package for computing distances and divergences between symmetric positive-definite (SPD) matrices. Unlike traditional toolkits that focus on specific applications, spd-metrics-id provides a unified,…

Computation · Statistics 2025-10-07 Kaosar Uddin

Background: In the field of radiology and radiotherapy, accurate delineation of tissues and organs plays a crucial role in both diagnostics and therapeutics. While the gold standard remains expert-driven manual segmentation, many automatic…

Quantitative Methods · Quantitative Biology 2025-08-14 Szuzina Fazekas , Bettina Katalin Budai , Viktor Bérczi , Pál Maurovich-Horvat , Zsolt Vizi

Distance metric learning is a branch of machine learning that aims to learn distances from the data, which enhances the performance of similarity-based algorithms. This tutorial provides a theoretical background and foundations on this…

Machine Learning · Computer Science 2020-08-20 Juan Luis Suárez-Díaz , Salvador García , Francisco Herrera

Distance metric learning is an important component for many tasks, such as statistical classification and content-based image retrieval. Existing approaches for learning distance metrics from pairwise constraints typically suffer from two…

Machine Learning · Computer Science 2012-06-26 Liu Yang , Rong Jin , Rahul Sukthankar

Mesh repair is a long-standing challenge in computer graphics and related fields. Converting defective meshes into watertight manifold meshes can greatly benefit downstream applications such as geometric processing, simulation, fabrication,…

Graphics · Computer Science 2023-09-04 Zhongtian Zheng , Xifeng Gao , Zherong Pan , Wei Li , Peng-Shuai Wang , Guoping Wang , Kui Wu

Correct performance assessment is crucial for evaluating modern artificial intelligence algorithms in medicine like deep-learning based medical image segmentation models. However, there is no universal metric library in Python for…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Dominik Müller , Dennis Hartmann , Philip Meyer , Florian Auer , Iñaki Soto-Rey , Frank Kramer

Comparing images to recommend items from an image-inventory is a subject of continued interest. Added with the scalability of deep-learning architectures the once `manual' job of hand-crafting features have been largely alleviated, and…

Information Retrieval · Computer Science 2017-11-15 Y Qian , E Vazquez , B Sengupta

Performance measures are an important tool for assessing and comparing different medical image segmentation algorithms. Unfortunately, the current measures have their weaknesses when it comes to assessing certain edge cases. These…

Computer Vision and Pattern Recognition · Computer Science 2022-10-26 Dennis Hartmann , Verena Schmid , Philip Meyer , Iñaki Soto-Rey , Dominik Müller , Frank Kramer

Many Multi-View-Stereo algorithms extract a 3D mesh model of a scene, after fusing depth maps into a volumetric representation of the space. Due to the limited scalability of such representations, the estimated model does not capture fine…

Computer Vision and Pattern Recognition · Computer Science 2019-05-23 Andrea Romanoni , Matteo Matteucci

In many robotics applications, it is necessary to compute not only the distance between the robot and the environment, but also its derivative - for example, when using control barrier functions. However, since the traditional Euclidean…

Domain specific (dis-)similarity or proximity measures used e.g. in alignment algorithms of sequence data, are popular to analyze complex data objects and to cover domain specific data properties. Without an underlying vector space these…

Data Structures and Algorithms · Computer Science 2014-11-07 Andrej Gisbrecht , Frank-Michael Schleif

Graphs are used in almost every scientific discipline to express relations among a set of objects. Algorithms that compare graphs, and output a closeness score, or a correspondence among their nodes, are thus extremely important. Despite…

Discrete Mathematics · Computer Science 2020-11-17 Sam Safavi , José Bento

Distance metric learning can be viewed as one of the fundamental interests in pattern recognition and machine learning, which plays a pivotal role in the performance of many learning methods. One of the effective methods in learning such a…

Machine Learning · Computer Science 2020-02-21 Mostafa Razavi Ghods , Mohammad Hossein Moattar , Yahya Forghani

In recent years, there has been a growing interest in using machine learning to overcome the high cost of numerical simulation, with some learned models achieving impressive speed-ups over classical solvers whilst maintaining accuracy.…

Machine Learning · Computer Science 2022-10-04 Meire Fortunato , Tobias Pfaff , Peter Wirnsberger , Alexander Pritzel , Peter Battaglia
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