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Active nematics is an emerging paradigm for characterising biological systems. One aspect of particularly intense focus is the role active nematic defects play in these systems, as they have been found to mediate a growing number of…

Soft Condensed Matter · Physics 2024-01-25 Andrew Killeen , Thibault Bertrand , Chiu Fan Lee

We introduce and analyze several aspects of a new model for cell differentiation. It assumes that differentiation of progenitor cells is a continuous process. From the mathematical point of view, it is based on partial differential…

Analysis of PDEs · Mathematics 2013-01-21 Marie Doumic , Anna Marciniak-Czochra , Benoit Perthame , Jorge P. Zubelli

To navigate a space, the brain makes an internal representation of the environment using different cells such as place cells, grid cells, head direction cells, border cells, and speed cells. All these cells, along with sensory inputs,…

Robotics · Computer Science 2026-04-17 Hibatallah Meliani , Khadija Slimani , Samira Khoulji

The use of machine learning algorithms to investigate phase transitions in physical systems is a valuable way to better understand the characteristics of these systems. Neural networks have been used to extract information of phases and…

Neural and Evolutionary Computing · Computer Science 2025-10-21 Rodrigo Carmo Terin , Zochil González Arenas , Roberto Santana

Artificial neurons built on synthetic gene networks have potential applications ranging from complex cellular decision-making to bioreactor regulation. Furthermore, due to the high information throughput of natural systems, it provides an…

Neural and Evolutionary Computing · Computer Science 2020-01-31 Sihao Huang

It is becoming increasingly appreciated that the signal transduction systems used by eukaryotic cells to achieve a variety of essential responses represent highly complex networks rather than simple linear pathways. While significant effort…

Molecular Networks · Quantitative Biology 2009-11-10 Kevin S. Brown , Colin C. Hill , Guillermo A. Calero , Kelvin H. Lee , James P. Sethna , Richard A. Cerione

Adult neurogenesis has long been documented in the vertebrate brain, and recently even in humans. Although it has been conjectured for many years that its functional role is related to the renewing of memories, no clear mechanism as to how…

Disordered Systems and Neural Networks · Physics 2007-05-23 Guillermo A. Cecchi , Leopoldo T. Petreanu , Arturo Alvarez-Buylla , Marcelo O. Magnasco

Artificial neural networks thrive in solving the classification problem for a particular rigid task, acquiring knowledge through generalized learning behaviour from a distinct training phase. The resulting network resembles a static entity…

Computer Vision and Pattern Recognition · Computer Science 2021-04-19 Matthias De Lange , Rahaf Aljundi , Marc Masana , Sarah Parisot , Xu Jia , Ales Leonardis , Gregory Slabaugh , Tinne Tuytelaars

Unraveling the structural factors influencing the dynamics of amorphous solids is crucial. While deep learning aids in navigating these complexities, transparency issues persist. Inspired by the successful application of prototype neural…

Soft Condensed Matter · Physics 2024-03-19 Xiao Jiang , Zean Tian , Kenli Li , Wangyu Hu

Bio-hybrid systems---close couplings of natural organisms with technology---are high potential and still underexplored. In existing work, robots have mostly influenced group behaviors of animals. We explore the possibilities of mixing…

Neural and Evolutionary Computing · Computer Science 2018-04-20 Mostafa Wahby , Mary Katherine Heinrich , Daniel Nicolas Hofstadler , Payam Zahadat , Sebastian Risi , Phil Ayres , Thomas Schmickl , Heiko Hamann

Current deep convolutional networks are fixed in their topology. We explore the possibilites of making the convolutional topology a parameter itself by combining NeuroEvolution of Augmenting Topologies (NEAT) with Convolutional Neural…

Neural and Evolutionary Computing · Computer Science 2022-12-01 Jan Hohenheim , Mathias Fischler , Sara Zarubica , Jeremy Stucki

While deep neural networks take loose inspiration from neuroscience, it is an open question how seriously to take the analogies between artificial deep networks and biological neuronal systems. Interestingly, recent work has shown that deep…

Neurons and Cognition · Quantitative Biology 2018-05-31 William Lotter , Gabriel Kreiman , David Cox

Generating accurate and efficient predictions for the motion of the humans present in the scene is key to the development of effective motion planning algorithms for robots moving in promiscuous areas, where wrong planning decisions could…

This paper proposes a physics-informed learning framework for a class of recurrent neural networks tailored to large-scale and networked systems. The approach aims to learn control-oriented models that preserve the structural and stability…

Systems and Control · Electrical Eng. & Systems 2026-03-27 Daniele Ravasio , Claudia Sbardi , Marcello Farina , Andrea Ballarino

Single-cell sequencing is revolutionizing biology by enabling detailed investigations of cell-state transitions. Many biological processes unfold along continuous trajectories, yet it remains challenging to extract smooth, low-dimensional…

Machine Learning · Statistics 2025-06-30 Rong Ma , Xi Li , Jingyuan Hu , Bin Yu

We use a Convolutional Recurrent Neural Network approach to learn morphological evolution driven by surface diffusion. To this aim we first produce a training set using phase field simulations. Intentionally, we insert in such a set only…

Computational Physics · Physics 2024-05-07 Daniele Lanzoni , Marco Albani , Roberto Bergamaschini , Francesco Montalenti

This paper describes some biologically-inspired processes that could be used to build the sort of networks that we associate with the human brain. New to this paper, a 'refined' neuron will be proposed. This is a group of neurons that by…

Artificial Intelligence · Computer Science 2018-02-06 Kieran Greer

The predictive learning of spatiotemporal sequences aims to generate future images by learning from the historical context, where the visual dynamics are believed to have modular structures that can be learned with compositional subsystems.…

Machine Learning · Computer Science 2022-04-12 Yunbo Wang , Haixu Wu , Jianjin Zhang , Zhifeng Gao , Jianmin Wang , Philip S. Yu , Mingsheng Long

Understanding the operation of biological and artificial networks remains a difficult and important challenge. To identify general principles, researchers are increasingly interested in surveying large collections of networks that are…

Machine Learning · Statistics 2022-01-14 Alex H. Williams , Erin Kunz , Simon Kornblith , Scott W. Linderman