English
Related papers

Related papers: Training Text-to-Molecule Models with Context-Awar…

200 papers

With the emerging branch of incorporating factual knowledge into pre-trained language models such as BERT, most existing models consider shallow, static, and separately pre-trained entity embeddings, which limits the performance gains of…

Computation and Language · Computer Science 2020-10-02 Tianxiang Sun , Yunfan Shao , Xipeng Qiu , Qipeng Guo , Yaru Hu , Xuanjing Huang , Zheng Zhang

Concept Bottleneck Models (CBMs) offer inherent interpretability by initially translating images into human-comprehensible concepts, followed by a linear combination of these concepts for classification. However, the annotation of concepts…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Hangzhou He , Lei Zhu , Xinliang Zhang , Shuang Zeng , Qian Chen , Yanye Lu

Molecule-and-text cross-modal representation learning has emerged as a promising direction for enhancing the quality of molecular representation, thereby improving performance in various scientific fields. However, most approaches employ a…

Quantitative Methods · Quantitative Biology 2025-03-04 Yikun Zhang , Geyan Ye , Chaohao Yuan , Bo Han , Long-Kai Huang , Jianhua Yao , Wei Liu , Yu Rong

Drug discovery can be viewed as a combinatorial search over an immense chemical space, motivating the development of deep generative models for de novo molecular design. Among these, GPT-based molecular language models (MLM) have shown…

Machine Learning · Computer Science 2026-02-02 Qianwei Yang , Dong Xu , Zhangfan Yang , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji

Large pre-trained language models have recently been expanded and applied to programming language tasks with great success, often through further pre-training of a strictly-natural language model--where training sequences typically contain…

Computation and Language · Computer Science 2024-02-13 Fenia Christopoulou , Guchun Zhang , Gerasimos Lampouras

The concept of semantic communication provides a novel approach for applications in scenarios with limited communication resources. In this paper, we propose an end-to-end (E2E) semantic molecular communication system, aiming to enhance the…

Signal Processing · Electrical Eng. & Systems 2024-04-16 Yukun Cheng , Wei Chen , Bo Ai

Table processing, a key task in natural language processing, has significantly benefited from recent advancements in language models (LMs). However, the capabilities of LMs in table-to-text generation, which transforms structured data into…

Computation and Language · Computer Science 2024-10-18 Sahar Iravani , Tim . O . F Conrad

Multilingual sequence-to-sequence models perform poorly with increased language coverage and fail to consistently generate text in the correct target language in few-shot settings. To address these challenges, we propose mmT5, a modular…

Computation and Language · Computer Science 2023-05-24 Jonas Pfeiffer , Francesco Piccinno , Massimo Nicosia , Xinyi Wang , Machel Reid , Sebastian Ruder

We investigate the mechanisms that arise when transformers are trained to solve arithmetic on sequences where tokens are variables whose meaning is determined only through their interactions in-context. While prior work has studied…

Computation and Language · Computer Science 2026-02-26 Eric Todd , Jannik Brinkmann , Rohit Gandikota , David Bau

State-of-the-art poetry generation systems are often complex. They either consist of task-specific model pipelines, incorporate prior knowledge in the form of manually created constraints, or both. In contrast, end-to-end models would not…

Computation and Language · Computer Science 2024-03-05 Jonas Belouadi , Steffen Eger

External knowledge is often useful for natural language understanding tasks. We introduce a contextual text representation model called Conceptual-Contextual (CC) embeddings, which incorporates structured knowledge into text…

Computation and Language · Computer Science 2020-03-13 Xiao Zhang , Dejing Dou , Ji Wu

Many natural language processing tasks benefit from long inputs, but processing long documents with Transformers is expensive -- not only due to quadratic attention complexity but also from applying feedforward and projection layers to…

Code optimization is the process of enhancing code efficiency, while preserving its intended functionality. This process often requires a deep understanding of the code execution behavior at run-time to identify and address inefficiencies…

Software Engineering · Computer Science 2026-04-02 Federico Di Menna , Luca Traini , Gabriele Bavota , Vittorio Cortellessa

Language Models (LMs) excel in understanding textual descriptions of proteins, as evident in biomedical question-answering tasks. However, their capability falters with raw protein data, such as amino acid sequences, due to a deficit in…

Quantitative Methods · Quantitative Biology 2024-05-22 Zhiyuan Liu , An Zhang , Hao Fei , Enzhi Zhang , Xiang Wang , Kenji Kawaguchi , Tat-Seng Chua

In recent years, Large Language Models (LLMs) have garnered significant attention from the research community due to their exceptional performance and generalization capabilities. In this paper, we introduce a novel method for…

Audio and Speech Processing · Electrical Eng. & Systems 2023-09-21 Egor Lakomkin , Chunyang Wu , Yassir Fathullah , Ozlem Kalinli , Michael L. Seltzer , Christian Fuegen

We observe that the mapping between an image's representation in one model to its representation in another can be learned surprisingly well with just a linear layer, even across diverse models. Building on this observation, we propose…

Computer Vision and Pattern Recognition · Computer Science 2023-05-12 Mazda Moayeri , Keivan Rezaei , Maziar Sanjabi , Soheil Feizi

TextVQA requires models to read and reason about text in images to answer questions about them. Specifically, models need to incorporate a new modality of text present in the images and reason over it to answer TextVQA questions. In this…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Yixuan Qiao , Hao Chen , Jun Wang , Shanshan Zhao , Yihao Chen , Xianbin Ye , Ziliang Li , Xianbiao Qi , Peng Gao , Guotong Xie

In many real-world scenarios (e.g., academic networks, social platforms), different types of entities are not only associated with texts but also connected by various relationships, which can be abstracted as Text-Attributed Heterogeneous…

Computation and Language · Computer Science 2023-10-24 Tao Zou , Le Yu , Yifei Huang , Leilei Sun , Bowen Du

While state-of-the-art Text-to-Speech systems can generate natural speech of very high quality at sentence level, they still meet great challenges in speech generation for paragraph / long-form reading. Such deficiencies are due to i)…

Computation and Language · Computer Science 2023-10-10 Yujia Xiao , Shaofei Zhang , Xi Wang , Xu Tan , Lei He , Sheng Zhao , Frank K. Soong , Tan Lee

Pretrained character-level and byte-level language models have been shown to be competitive with popular subword models across a range of Natural Language Processing (NLP) tasks. However, there has been little research on their…

Computation and Language · Computer Science 2024-05-24 Lukas Edman , Gabriele Sarti , Antonio Toral , Gertjan van Noord , Arianna Bisazza