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Related papers: Training Text-to-Molecule Models with Context-Awar…

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This paper introduces a novel approach for identifying the possible large language models (LLMs) involved in text generation. Instead of adding an additional classification layer to a base LM, we reframe the classification task as a…

Computation and Language · Computer Science 2024-02-08 Yutian Chen , Hao Kang , Vivian Zhai , Liangze Li , Rita Singh , Bhiksha Raj

Deep learning (DL) techniques are gaining more and more attention in the software engineering community. They have been used to support several code-related tasks, such as automatic bug fixing and code comments generation. Recent studies in…

Molecular representation learning has become a central approach in AI-driven drug discovery, yet existing molecular tokenizations such as SMILES remain largely syntactic and do not naturally align with chemically meaningful substructures.…

Machine Learning · Computer Science 2026-05-19 Takayuki Kimura

Small molecules are essential to drug discovery, and graph-language models hold promise for learning molecular properties and functions from text. However, existing molecule-text datasets are limited in scale and informativeness,…

Biomolecules · Quantitative Biology 2025-06-03 Yihan Zhu , Gang Liu , Eric Inae , Meng Jiang

We describe models focused at the understudied problem of translating between monolingual and code-mixed language pairs. More specifically, we offer a wide range of models that convert monolingual English text into Hinglish (code-mixed…

Computation and Language · Computer Science 2021-05-20 Ganesh Jawahar , El Moatez Billah Nagoudi , Muhammad Abdul-Mageed , Laks V. S. Lakshmanan

Recent advancements in biological research leverage the integration of molecules, proteins, and natural language to enhance drug discovery. However, current models exhibit several limitations, such as the generation of invalid molecular…

Computation and Language · Computer Science 2024-01-30 Qizhi Pei , Wei Zhang , Jinhua Zhu , Kehan Wu , Kaiyuan Gao , Lijun Wu , Yingce Xia , Rui Yan

With the emergence of neural audio codecs, which encode multiple streams of discrete tokens from audio, large language models have recently gained attention as a promising approach for zero-shot Text-to-Speech (TTS) synthesis. Despite the…

Audio and Speech Processing · Electrical Eng. & Systems 2024-04-04 Jaehyeon Kim , Keon Lee , Seungjun Chung , Jaewoong Cho

Transformer-based encoder-decoder models have demonstrated impressive results in chemical reaction prediction tasks. However, these models typically rely on pretraining using tens of millions of unlabelled molecules, which can be…

Computation and Language · Computer Science 2024-05-20 Jiayun Pang , Ivan Vulić

The recent "Text-to-Text Transfer Transformer" (T5) leveraged a unified text-to-text format and scale to attain state-of-the-art results on a wide variety of English-language NLP tasks. In this paper, we introduce mT5, a multilingual…

Computation and Language · Computer Science 2021-03-12 Linting Xue , Noah Constant , Adam Roberts , Mihir Kale , Rami Al-Rfou , Aditya Siddhant , Aditya Barua , Colin Raffel

We propose ContextLM, a framework that implicitly learns multi-token prediction by augmenting standard pretraining with an intrinsic next-context prediction objective. ContextLM builds a language model on top of context embeddings that span…

Computation and Language · Computer Science 2026-02-12 Beiya Dai , Yuliang Liu , Daozheng Xue , Yunchong Song , Qipeng Guo , Kai Chen , Xinbing Wang , Bowen Zhou , Zhouhan Lin

Learning to construct text representations in end-to-end systems can be difficult, as natural languages are highly compositional and task-specific annotated datasets are often limited in size. Methods for directly supervising language…

Computation and Language · Computer Science 2018-11-15 Marek Rei , Anders Søgaard

The increasing use of token-based representations in language-driven applications has motivated wireless token communication, where tokens are treated as fundamental units for transmission. However, conventional communication systems…

Signal Processing · Electrical Eng. & Systems 2026-05-05 Junyong Shin , Joohyuk Park , Yongjeong Oh , Jihong Park , Jinho Choi , Yo-Seb Jeon

Pre-trained models for Natural Languages (NL) like BERT and GPT have been recently shown to transfer well to Programming Languages (PL) and largely benefit a broad set of code-related tasks. Despite their success, most current methods…

Computation and Language · Computer Science 2021-09-03 Yue Wang , Weishi Wang , Shafiq Joty , Steven C. H. Hoi

Molecular property prediction is an increasingly critical task within drug discovery and development. Typically, neural networks can learn molecular properties using graph-based, language-based or feature-based methods. Recent advances in…

Machine Learning · Computer Science 2025-07-31 Philip Spence , Brooks Paige , Anne Osbourn

Recent research trends in computational biology have increasingly focused on integrating text and bio-entity modeling, especially in the context of molecules and proteins. However, previous efforts like BioT5 faced challenges in…

Quantitative Methods · Quantitative Biology 2024-06-03 Qizhi Pei , Lijun Wu , Kaiyuan Gao , Xiaozhuan Liang , Yin Fang , Jinhua Zhu , Shufang Xie , Tao Qin , Rui Yan

Choosing an appropriate tokenization scheme is often a bottleneck in low-resource cross-lingual transfer. To understand the downstream implications of text representation choices, we perform a comparative analysis on language models having…

Computation and Language · Computer Science 2023-10-13 Md Mushfiqur Rahman , Fardin Ahsan Sakib , Fahim Faisal , Antonios Anastasopoulos

Existing curriculum learning approaches to Neural Machine Translation (NMT) require sampling sufficient amounts of "easy" samples from training data at the early training stage. This is not always achievable for low-resource languages where…

Computation and Language · Computer Science 2021-03-23 Chen Liang , Haoming Jiang , Xiaodong Liu , Pengcheng He , Weizhu Chen , Jianfeng Gao , Tuo Zhao

Label scarcity is a bottleneck for improving task performance in specialised domains. We propose a novel compositional transfer learning framework (DoT5 - domain compositional zero-shot T5) for zero-shot domain transfer. Without access to…

Image-text models excel at image-level tasks but struggle with detailed visual understanding. While these models provide strong visual-language alignment, segmentation models like SAM2 offer precise spatial boundaries for objects. To this…

Computer Vision and Pattern Recognition · Computer Science 2025-11-07 Yao Xiao , Qiqian Fu , Heyi Tao , Yuqun Wu , Zhen Zhu , Derek Hoiem

While various models and computational tools have been proposed for structure and property analysis of molecules, generating molecules that conform to all desired structures and properties remains a challenge. Here, we introduce a…

Computation and Language · Computer Science 2024-10-11 Peng Zhou , Jianmin Wang , Chunyan Li , Zixu Wang , Yiping Liu , Siqi Sun , Jianxin Lin , Leyi Wei , Xibao Cai , Houtim Lai , Wei Liu , Longyue Wang , Yuansheng Liu , Xiangxiang Zeng