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Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualization capabilities. However, this human-centric design…

Other Quantitative Biology · Quantitative Biology 2026-02-25 Matthias Flotho , Ian Ferenc Diks , Philipp Flotho , Leidy-Alejandra G. Molano , Pascal Hirsch , Andreas Keller

The Model Context Protocol (MCP) is a new and emerging technology that extends the functionality of large language models, improving workflows but also exposing users to a new attack surface. Several studies have highlighted related…

Cryptography and Security · Computer Science 2026-04-14 Tobias Mattsson , Samuel Nyberg , Anton Borg , Ricardo Britto

Recently, Omni-modal large language models (OLLMs) have sparked a new wave of research, achieving impressive results in tasks such as audio-video understanding and real-time environment perception. However, hallucination issues still…

Artificial Intelligence · Computer Science 2025-09-03 Junzhe Chen , Tianshu Zhang , Shiyu Huang , Yuwei Niu , Chao Sun , Rongzhou Zhang , Guanyu Zhou , Lijie Wen , Xuming Hu

Multimodal large language models (MLLMs) have recently achieved remarkable progress in radiology by integrating visual perception with natural language understanding. However, they often generate clinically unsupported descriptions, known…

Computation and Language · Computer Science 2025-10-20 Xi Zhang , Zaiqiao Meng , Jake Lever , Edmond S. L. Ho

Conceptual Knowledge Markup Language (CKML) is an application of XML. Earlier versions of CKML followed rather exclusively the philosophy of Conceptual Knowledge Processing (CKP), a principled approach to knowledge representation and data…

Artificial Intelligence · Computer Science 2018-10-15 Robert E. Kent

Modeling a system's temporal behaviour in reaction to external stimuli is a fundamental problem in many areas. Pure Machine Learning (ML) approaches often fail in the small sample regime and cannot provide actionable insights beyond…

Machine Learning · Computer Science 2021-06-18 Zhaozhi Qian , William R. Zame , Lucas M. Fleuren , Paul Elbers , Mihaela van der Schaar

Despite the rapid success of Large Vision-Language Models (LVLMs), a persistent challenge is their tendency to generate hallucinated content, undermining reliability in real-world use. Existing training-free methods address hallucinations…

Computer Vision and Pattern Recognition · Computer Science 2026-01-05 Neeraj Anand , Samyak Jha , Udbhav Bamba , Rahul Rahaman

The concept bottleneck model (CBM) is an interpretable-by-design framework that makes decisions by first predicting a set of interpretable concepts, and then predicting the class label based on the given concepts. Existing CBMs are trained…

Computer Vision and Pattern Recognition · Computer Science 2024-08-06 Andong Tan , Fengtao Zhou , Hao Chen

Machine learning is a vital part of many real-world systems, but several concerns remain about the lack of interpretability, explainability and robustness of black-box AI systems. Concept Bottleneck Models (CBM) address some of these…

Machine Learning · Statistics 2025-10-24 Hidde Fokkema , Tim van Erven , Sara Magliacane

Vision-language models (VLMs) pre-trained at large scale have shown unprecedented transferability capabilities and are being progressively integrated into medical image analysis. Although its discriminative potential has been widely…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Julio Silva-Rodríguez , Leo Fillioux , Paul-Henry Cournède , Maria Vakalopoulou , Stergios Christodoulidis , Ismail Ben Ayed , Jose Dolz

Agentic workflows driven by large language models (LLMs) are increasingly applied to Building Information Modelling (BIM), enabling natural-language retrieval, modification and generation of IFC models. Recent work has begun adopting the…

Other Computer Science · Computer Science 2026-03-31 Tobias Heimig-Elschner , Changyu Du , Anna Scheuvens , André Borrmann , Jakob Beetz

The rapid growth of high-resolution scientific simulations and observation systems is generating massive spatiotemporal datasets, making efficient, error-bounded compression increasingly important. Meanwhile, decoder-only large language…

Machine Learning · Computer Science 2025-11-06 Guozhong Li , Muhannad Alhumaidi , Spiros Skiadopoulos , Panos Kalnis

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities in vision-language understanding, reasoning, and generation. However, they struggle with tasks requiring fine-grained localization and reasoning in…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Jaeseong Lee , Yeeun Choi , Heechan Choi , Hanjung Kim , Seonjoo Kim

Medical coding translates free-text clinical documentation into standardized codes drawn from classification systems that contain tens of thousands of entries and are updated annually. It is central to billing, clinical research, and…

Artificial Intelligence · Computer Science 2026-04-01 Joakim Edin , Andreas Motzfeldt , Simon Flachs , Lars Maaløe

Large Language Model (LLM) agents are deployed in complex environments -- such as massive codebases, enterprise databases, and conversational histories -- where the relevant state far exceeds their context windows. To navigate these spaces,…

Artificial Intelligence · Computer Science 2026-05-11 Chinmaya Kausik , Adith Swaminathan , Nathan Kallus

Object-centric world models (OCWM) aim to decompose visual scenes into object-level representations, providing structured abstractions that could improve compositional generalization and data efficiency in reinforcement learning. We…

Artificial Intelligence · Computer Science 2025-11-12 Stefano Ferraro , Akihiro Nakano , Masahiro Suzuki , Yutaka Matsuo

Combining multiple Vision-Language Models (VLMs) can enhance multimodal reasoning and robustness, but aggregating heterogeneous models' outputs amplifies uncertainty and increases the risk of hallucinations. We propose SCoOP…

Artificial Intelligence · Computer Science 2026-05-29 Chung-En Johnny Yu , Brian Jalaian , Nathaniel D. Bastian

Drug synergy prediction (DSP) aims to identify efficacious drug combinations under various cellular contexts with different targets. However, the continual emergence of novel compounds results in variations in molecular scaffolds and sizes,…

Machine Learning · Computer Science 2026-05-29 Xin Wang , Linxin Xiao , Yang Yao , Wenwu Zhu

Large language models(LLMs) excel at text generation and knowledge question-answering tasks, but they are prone to generating hallucinated content, severely limiting their application in high-risk domains. Current hallucination detection…

Computation and Language · Computer Science 2025-12-25 Shize Liang , Hongzhi Wang

Industrial automation increasingly requires flexible control strategies that can adapt to changing tasks and environments. Agents based on Large Language Models (LLMs) offer potential for such adaptive planning and execution but lack…

Artificial Intelligence · Computer Science 2025-12-04 Niklas Jobs , Luis Miguel Vieira da Silva , Jayanth Somashekaraiah , Maximilian Weigand , David Kube , Felix Gehlhoff