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Despite the striking success of general protein folding models such as AlphaFold2(AF2, Jumper et al. (2021)), the accurate computational modeling of antibody-antigen complexes remains a challenging task. In this paper, we first analyze…

Quantitative Methods · Quantitative Biology 2024-07-03 Ruidong Wu , Ruihan Guo , Rui Wang , Shitong Luo , Yue Xu , Jiahan Li , Jianzhu Ma , Qiang Liu , Yunan Luo , Jian Peng

Bias in medical AI is often framed as a problem of representation. However, in image-based tasks such as fetal ultrasound, performance disparities can arise even when representation is adequate, because predictive accuracy depends strongly…

Camera-conditioned video generation requires positional encoding that remains reliable under changes in camera motion, lens configuration, and scene structure. However, existing attention-level camera encodings either provide ray-only…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Seonghyun Jin , Youngmin Kim , Sunwoo Park , Jong Chul Ye

Segmentation of anatomical structures and pathologies is inherently ambiguous. For instance, structure borders may not be clearly visible or different experts may have different styles of annotating. The majority of current state-of-the-art…

Fourier ptychography (FP), as a computational imaging method, is a powerful tool to improve imaging resolution. Camera-scanning Fourier ptychography extends the application of FP from micro to macro creatively. Due to the non-ideal scanning…

Image and Video Processing · Electrical Eng. & Systems 2022-06-08 Baiqi Cui , Shaohui Zhang , Yechao Wang , Yao Hu , Qun Hao

Multi-layer perceptrons (MLP) have proven to be effective scene encoders when combined with higher-dimensional projections of the input, commonly referred to as \textit{positional encoding}. However, scenes with a wide frequency spectrum…

Computer Vision and Pattern Recognition · Computer Science 2022-06-20 Zoe Landgraf , Alexander Sorkine Hornung , Ricardo Silveira Cabral

In this work, we leverage the intrinsic segmentation of language sequences and design a new positional encoding method called Bilevel Positional Encoding (BiPE). For each position, our BiPE blends an intra-segment encoding and an…

Machine Learning · Computer Science 2024-06-18 Zhenyu He , Guhao Feng , Shengjie Luo , Kai Yang , Liwei Wang , Jingjing Xu , Zhi Zhang , Hongxia Yang , Di He

Ultrasound imaging is one of the most widely used diagnostic modalities, offering real-time, radiation-free assessment across diverse clinical domains. However, interpretation of ultrasound images remains challenging due to high noise…

Image and Video Processing · Electrical Eng. & Systems 2025-11-10 Youssef Megahed , Robin Ducharme , Aylin Erman , Mark Walker , Steven Hawken , Adrian D. C. Chan

The quality of the inverse approach in electroencephalography (EEG) source analysis is - among other things - depending on the accuracy of the forward modeling approach, i.e., the simulation of the electric potential for a known dipole…

Medical Physics · Physics 2022-08-08 Florian Drechsler , Johannes Vorwerk , Jens Haueisen , Lars Grasedyck , Carsten H. Wolters

Poisson denoising is an essential issue for various imaging applications, such as night vision, medical imaging and microscopy. State-of-the-art approaches are clearly dominated by patch-based non-local methods in recent years. In this…

Computer Vision and Pattern Recognition · Computer Science 2016-09-20 Wensen Feng , Hong Qiao , Yunjin Chen

Digital aberration measurement and removal play a prominent role in computational imaging platforms aimed at achieving simple and compact optical arrangements. A recent important class of such platforms is Fourier ptychography, which is…

Medical Image Segmentation (MIS) plays a crucial role in medical therapy planning and robot navigation. Prototype learning methods in MIS focus on generating segmentation masks through pixel-to-prototype comparison. However, current…

Methodology · Statistics 2025-07-11 Guoyan Liang , Qin Zhou , Jingyuan Chen , Zhe Wang , Chang Yao

Flexible Electronics (FE) offer a promising alternative to rigid silicon-based hardware for wearable healthcare devices, enabling lightweight, conformable, and low-cost systems. However, their limited integration density and large feature…

Animal pose estimation (APE) aims to locate the animal body parts using a diverse array of sensor and modality inputs (e.g. RGB cameras, LiDAR, infrared, IMU, acoustic and language cues), which is crucial for research across neuroscience,…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Qianyi Deng , Oishi Deb , Amir Patel , Christian Rupprecht , Philip Torr , Niki Trigoni , Andrew Markham

We present a method for dimensionally adaptive sparse trigonometric interpolation of multidimensional periodic functions belonging to a smoothness class of finite order. This method targets applications where periodicity must be preserved…

Numerical Analysis · Mathematics 2020-08-28 Zack Morrow , Miroslav Stoyanov

Gastrointestinal (GI) endoscopy is essential in identifying GI tract abnormalities in order to detect diseases in their early stages and improve patient outcomes. Although deep learning has shown success in supporting GI diagnostics and…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Alina Devkota , Annahita Amireskandari , Joel Palko , Shyam Thakkar , Donald Adjeroh , Xiajun Jiang , Binod Bhattarai , Prashnna K. Gyawali

Multi-Resolution Hash Encoding (MHE), the foundational technique behind Instant Neural Graphics Primitives, provides a powerful parameterization for neural fields. However, its spatial behavior lacks rigorous understanding from a physical…

Computer Vision and Pattern Recognition · Computer Science 2026-02-12 Tianxiang Dai , Jonathan Fan

Position representation is crucial for building position-aware representations in Transformers. Existing position representations suffer from a lack of generalization to test data with unseen lengths or high computational cost. We…

Computation and Language · Computer Science 2021-09-14 Shun Kiyono , Sosuke Kobayashi , Jun Suzuki , Kentaro Inui

The AlphaFold Protein Structure Database (AFDB) offers unparalleled structural coverage at near-experimental accuracy, positioning it as a valuable resource for data-driven protein design. However, its direct use in training deep models…

Machine Learning · Computer Science 2025-06-11 Cheng Tan , Zhenxiao Cao , Zhangyang Gao , Siyuan Li , Yufei Huang , Stan Z. Li

Over several decades, electromechanical impedance (EMI) measurements have been employed as a basis for structural health monitoring and damage detection. Traditionally, Root-mean-squared-deviation (RMSD) and Cross-correlation (XCORR) based…

Applications · Statistics 2026-04-30 Sourabh Sangle , Sa'ed Alajlouni , Pablo A. Tarazaga
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